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Botany

2027 season

Last reviewed October 16, 2026

On this page(21 sections)
Type: Study
Divisions: B, C
Participants: Up to 2
Approx. Time: 50 minutes
Allowed Resources: One 8.5×11 sheet per team (both sides, no affixed labels); up to two Class II calculators. Same in B and C.

Botany is the Science Olympiad event about plant life in general: how plants are built, how they grow and move water and sugar, how the major groups differ, where they came from, and what they mean for ecosystems and for people. The 2027 rules make it a broad, general-botany event. Next to the core of anatomy and physiology, the topic list names the history of botany, plant genetics, paleobotany, global energy and nutrient cycles, crops and plant products, genetically modified organisms, and plant diseases, including nutrient deficiencies. Division C adds four more areas: horticulture and aquaculture, plant biochemistry, plants in medicine and environmental management, and the importance of plant diversity.

There are no subtopic guides for botany, so this page covers the whole event. Each section takes one area of the 2027 outline, explains the mechanism behind it, works the formulas, and shows how archived tournament questions test it.

Event format

RuleDivision BDivision C
TeamUp to 2 studentsUp to 2 students
TimeAbout 50 minutesAbout 50 minutes
CalculatorsUp to two Class II calculatorsUp to two Class II calculators
NotesOne 8.5" × 11" sheet, both sides, any content from any sourceSame as Division B
WritingWriting utensilsWriting utensils
Provided by supervisorsLive or preserved specimens, pictures, data tables and graphs, microscopes, slides and other equipmentSame as Division B
FormatA written (paper) test or a station test, at the supervisor's choiceSame as Division B
ScoringHigh score wins; preselected questions break tiesSame as Division B

The two divisions share identical logistics in 2027. Only the topic list differs (see the next section).

Calculators. Class II means a stand-alone scientific calculator that is neither programmable nor graphing (a TI-30X or Casio fx-260 type). A lower class is always allowed. Graphing calculators, programmable non-graphing calculators and phone or watch apps are not. The class definitions are in the General Rules on soinc.org.

The notes sheet. You get exactly one sheet of letter paper, and you may use both sides. Lamination or a sheet protector is fine for durability, but a second sheet (even inside the same protector) is not, and neither are labels or tabs stuck onto the page. With a topic list this wide, the sheet should hold the things you cannot reason out: dates, names, deficiency symptoms, the hormone table and formulas.

Specimens and equipment. The supervisor brings everything that is examined, so expect real or preserved plant material, slides and microscopes at stations. If a supervisor uses toxic or irritating plants, or specimens kept in liquid (algae and protists, for example), they must be in closed, unbreakable containers. Practice focusing a compound microscope and identifying tissues on prepared slides before the tournament. Total magnification = ocular lens (usually 10×) × objective (4×, 10× or 40×), so 10× × 40× = 400×. Start on the lowest objective with the coarse knob, then switch up and use only the fine knob; the image is upside down and reversed, and moving the slide left moves the image right. The field of view shrinks as magnification rises (a 4.0 mm field at 40× is 0.40 mm at 400×), so estimate a cell's size by dividing the field diameter by the number of cells that span it.

Eye protection. The event page sets no event-specific eye-protection requirement; the General Rules and policies on soinc.org still apply.

What the rules cover

The 2027 rules describe Botany in three layers: the structure and function of the plant body, the broad divisions between groups of plants, and a numbered list of additional topics. Division B has 11 numbered topics; Division C has the same 11 plus four more. The rules set no level restrictions (Regional, State and National cover the same list) and give no specimen list or topic weights.

Rules areaDivision BDivision CWhere it is covered
Structure of cells, roots, stems, leaves, spore-forming bodies and flowersYesYesThe plant body
Plant growth and differentiationYesYesGrowth and differentiation
Transport and storage of gases, water and nutrientsYesYesTransport and storage
Major divisions: algae vs. multicellular plants, monocot vs. dicot, embryophytes vs. cryptogams, woody vs. herbaceousYesYesMajor groups of plants
i. History of botanyYesYesHistory of botany
ii. Basic plant genetics and reproductionYesYesGenetics and reproduction
iii. PhotosynthesisYesYesPhotosynthesis and respiration
iv. Differences between the major taxonomic groupsYesYesMajor groups of plants
v. Paleobotany and plant evolutionYesYesPaleobotany and plant evolution
vi. Plants in global energy and nutrient cyclesYesYesPlants in ecosystems
vii. Use of plant materials by animals and humansYesYesPlants, food and people
viii. Competition in the plant communityYesYesPlants in ecosystems
ix. Genetically modified organismsYesYesPlants, food and people
x. Production of foodstuffs and plant productsYesYesPlants, food and people
xi. Plant diseases, including nutrient deficiencies and infectionsYesYesPlant diseases and nutrient deficiencies
xii. Horticulture and aquacultureNoYesDivision C topics
xiii. Plant biochemistryNoYesDivision C topics
xiv. Plants in medicine and environmental managementNoYesDivision C topics
xv. Importance of plant diversityNoYesDivision C topics

The source references for this table are the 2027 Botany pages (B11 for Division B, C13 for Division C), section 3, items b through d.

The plant body

A flowering plant has two organ systems. The root system (roots) anchors the plant, absorbs water and minerals and often stores food; the shoot system (stems, leaves, buds, flowers, fruits and seeds) photosynthesizes and reproduces. Tests often ask for the "six basic parts of a plant": the three vegetative organs (roots, stems, leaves) and the three reproductive ones (flowers, fruits, seeds). Not every plant has all of them (bryophytes have no true roots, stems or leaves; ferns and conifers have no flowers or fruits; dodder has almost no leaves).

Cells

Plant cells are eukaryotic. They share the basics of animal cells (nucleus, mitochondria, plasma membrane, endoplasmic reticulum, Golgi, ribosomes, cytoskeleton) and add three features that explain most of plant structure: a cell wall, a large central vacuole and plastids. Of these, chloroplasts and a cellulose wall are the features found in neither animal nor fungal cells (fungi have walls of chitin). Plant cells usually lack centrioles (and centrosomes of the animal type) and typical lysosomes; the vacuole does the lysosome's digestive job.

StructureWhat it doesDetail tests ask
Cell wallResists the pressure of water inside the cell; gives shape and supportMade mostly of cellulose (chains of β-glucose), with hemicellulose, pectin and structural proteins such as extensins that add rigidity; lipid polymers (cutin, suberin) occur only in specialized walls
NucleusHolds the chromosomes and controls the cellDouble nuclear envelope with pores; the nucleolus inside it makes ribosomal RNA and assembles ribosome subunits
Plasma membraneSelectively permeable barrier that controls what enters and leaves the cellLies just inside the wall; its pumps (such as the proton pump) and channels move ions, water (through aquaporins) and sugars
Middle lamellaGlues neighboring cells togetherPectin layer rich in calcium (and magnesium) pectates; dissolving it softens ripe fruit
Primary wallThin, flexible wall of a growing cellCellulose microfibrils in a pectin-hemicellulose matrix, so the cell can still expand
Secondary wallLaid down inside the primary wall after growth stopsThick, often stiffened and waterproofed with lignin; found in xylem and sclerenchyma; interrupted by pits
PlasmodesmataChannels through walls that link the cytoplasm of neighborsMake the symplast (one continuous cytoplasm)
Central vacuoleStores water, ions, sugars, pigments (anthocyanins), defensive toxins and waste; breaks down old cell partsBounded by the tonoplast; can fill 80 to 90% of a mature cell; its pressure on the wall is turgor
ChloroplastPhotosynthesisDouble envelope, thylakoids in grana, stroma; own DNA and ribosomes (see Photosynthesis)
Other plastidsAll develop from small proplastids and divide by fissionChromoplasts (carotenoid pigments that color petals and ripe fruit such as tomatoes and peppers, attracting pollinators and seed dispersers); leucoplasts (colorless), including amyloplasts (starch; also gravity-sensing statoliths), elaioplasts (oil) and proteinoplasts (protein); etioplasts (chloroplast precursors in dark-grown leaves)
PeroxisomesBreak down hydrogen peroxide; part of photorespirationGlyoxysomes are specialized peroxisomes that turn stored fat into sugar in oily germinating seeds
MitochondriaCellular respirationPresent in every living plant cell, photosynthetic or not
Labeled diagram of a plant cell showing the cell wall, plasma membrane, large central vacuole with its tonoplast, chloroplasts, nucleus, mitochondria, endoplasmic reticulum, Golgi apparatus, ribosomes, plasmodesmata and other organelles.
A generalized plant cell. Notice the three plant features: the cell wall (with plasmodesmata crossing it), the large central vacuole that presses the cytoplasm against the wall, and the chloroplasts.Credit: LadyofHats, Public domain, via Wikimedia Commons · source

Plant cells divide with a cell plate that grows outward from a phragmoplast (a scaffold of microtubules that steers Golgi vesicles full of wall material to the cell's equator) to become the new wall, instead of pinching in two as animal cells do. Chloroplast membranes record how a chloroplast was acquired: green algae and plants (primary endosymbiosis) have two, while algae that gained theirs by secondary endosymbiosis have three (euglenoids) or four (brown algae).

Osmosis is the diffusion of water across a selectively permeable membrane, from the side with fewer dissolved solutes (higher water potential) to the side with more (lower water potential). Diffusion is the net movement of any substance from higher to lower concentration and needs no energy; active transport moves ions or sugars against their gradient using ATP (often through a proton pump).

Water and the cell. When a cell takes in water, its vacuole swells against the rigid wall and creates turgor pressure. Turgor keeps herbaceous stems and leaves upright and drives the opening of stomata; a wilted plant has lost turgor. The outcome depends on the solution outside the cell:

Surrounding solutionWater movesPlant cell becomesWhy it matters
Hypotonic (lower solute concentration than the cell)Into the cellTurgid (firm); the wall stops it from burstingThe normal, healthy state
IsotonicNo net movementFlaccid (limp)The plant wilts
Hypertonic (higher solute concentration)Out of the cellPlasmolyzed: the membrane pulls away from the wallFertilizer burn, salty soil, salted roadsides

Tissues

Tissue systemMain cell typesFunction
DermalEpidermis, guard cells, root hairs, trichomes; periderm (cork) in woody partsCovers the plant, controls gas exchange and water loss, absorbs water and minerals, defends against pathogens, herbivores and UV light
GroundParenchyma (storage and photosynthesis), collenchyma (flexible support), sclerenchyma (rigid support: fibers and sclereids)Most of the plant body; photosynthesizes, stores food and water, supports
VascularXylem (tracheids, vessel elements), phloem (sieve-tube elements, companion cells)Moves water and minerals (xylem) and sugars (phloem)

Ground tissue inside the ring of vascular tissue is the pith; ground tissue outside it is the cortex. Both are mostly parenchyma that stores water, sugar and starch. A simple tissue has one cell type (parenchyma, collenchyma, sclerenchyma); a complex tissue has several (xylem, phloem, epidermis).

Cell typeAlive at maturity?WallJob and examples
ParenchymaYesUsually a thin primary wall onlyThe most numerous, least specialized cells: photosynthesis (leaf mesophyll is parenchyma, also called chlorenchyma), storage (potato tuber, pith), secretion, wound healing; they keep the ability to divide, so they regenerate cuttings and form callus in tissue culture
CollenchymaYesPrimary wall unevenly thickened at the corners, no ligninFlexible support for growing stems and petioles that must bend without breaking: the "strings" of celery
SclerenchymaUsually deadThick lignified secondary walls (stain red with lignin stains such as safranin or phloroglucinol)Rigid support. Fibers: long, slender, in strands (flax, hemp, jute). Sclereids (stone cells): short and irregular, giving the grit of pears and the hardness of nutshells and seed coats
TracheidsDeadLignified, with pitsLong, tapered water-conducting cells in all vascular plants; water passes from one to the next through pits; the main conducting cells of gymnosperms
Vessel elementsDeadLignified, with open perforation plates at the endsShort, wide cells joined end to end into vessels, the main water pipes of angiosperms (and gnetophytes); faster flow, but more prone to air bubbles
Sieve-tube elementsYes, but no nucleus, few organellesPrimary wall; end walls are sieve platesConduct sugar in angiosperm phloem; P-protein and callose seal damaged sieve plates
Companion cellsYes, with nucleus and many ribosomes and mitochondriaPrimary wallRun the metabolism of their sieve-tube element through plasmodesmata and load sugar into it
Sieve cells + albuminous (Strasburger) cellsSieve cells alive without nucleusPrimary wallThe gymnosperm equivalents of sieve tubes and companion cells (ferns have sieve cells but no albuminous cells)

Why should xylem be dead? Empty, lignified tubes have no cytoplasm in the way, so water flows freely, and their thick walls do not collapse under the tension that pulls water up. Phloem must stay alive because sugar loading and pressure-flow need working membranes. Water passes between conducting cells through bordered pits, thin pit membranes framed by an overarching rim of secondary wall; in conifers the pit membrane has a central thickened torus that seals the pit like a valve if a neighboring tracheid fills with air, limiting the spread of embolisms. Vascular bundles are collateral when phloem lies outside the xylem on the same radius; open bundles keep a strip of cambium between xylem and phloem (eudicots, gymnosperms) and closed bundles have none (monocots); stems are endarch (the protoxylem, the first narrow xylem cells to mature, lies toward the center, with later, wider metaxylem outside it) and roots are exarch (protoxylem toward the outside).

The epidermis is usually one cell layer thick, covered by a waxy cuticle made of cutin and waxes, which limits water loss and keeps out pathogens and UV light; the cuticle covers all aerial parts (leaves, stems, fruits) but not roots, which must absorb water. Epidermal specialties include guard cells, trichomes (hairs that deter insects physically or with toxic, sticky or bad-tasting secretions from glandular tips, reflect light, and trap a humid layer of air that cuts water loss), root hairs (extensions of single epidermal cells that multiply absorbing surface), bulliform cells (large cells that let grass leaves roll up in drought) and hydathodes (pores at leaf margins through which guttation water escapes). In woody stems the epidermis is replaced by periderm, whose loose patches, lenticels, admit air. Secretory structures include nectaries, resin ducts (conifers) and laticifers (the latex of milkweed, poppy and rubber trees). Single specialized cells scattered among ordinary ones are idioblasts: many hold crystals of calcium oxalate, either needle-shaped raphides (bundled in cells of Dieffenbachia, taro and grape, which burn the mouth when chewed) or star-shaped druses, while cystoliths of calcium carbonate grow in leaf cells of figs and rubber plants. Crystals deter herbivores and store excess calcium. Fresh, living plant tissue is mostly water, typically about 80 to 95% of fresh mass in leaves and herbaceous parts (less in wood and seeds), which is why yields and growth are often measured as dry mass.

Roots, stems and leaves

OrganMain jobStructure to know
RootAnchors, absorbs water and minerals, stores food in many speciesRoot cap protects the tip; root hairs multiply surface area; taproot (most dicots) vs. fibrous system (monocots)
StemSupports leaves and flowers, conducts water and sugarNodes (where leaves attach) and internodes; axillary buds; vascular bundles in a ring (dicots) or scattered (monocots)
LeafPhotosynthesis and gas exchangeBlade, petiole, stipules; cuticle, epidermis, palisade and spongy mesophyll, stomata, veins

Roots

A taproot system has one dominant main root that grows deep, with smaller laterals: it reaches deep water and anchors well, suiting dry places and most dicots (carrot, dandelion, oak). A fibrous root system is a dense mat of many similar, thin roots near the surface: it holds topsoil against erosion and soaks up rain quickly, typical of monocots such as grasses. Adventitious roots grow from stems or leaves rather than from another root, which is what cuttings must produce to succeed.

Root layers. In cross-section a young root has, from outside in, the epidermis (with root hairs), the cortex (storage), the endodermis with its waterproof Casparian strip (a band of lignin, later backed by suberin layers, in the radial and end walls that blocks water from slipping between cells), the pericycle (dividing cells that produce lateral roots), and the central vascular cylinder (stele). In a eudicot root the xylem forms a central star or X with phloem between its arms and no pith; in a monocot root a ring of xylem and phloem strands surrounds a central pith. Pericycle is a frequent test answer.

Root modificationWhat it doesExamples
Storage rootsSwollen with starch or sugarTaproots: carrot, beet, radish, turnip; tuberous roots: sweet potato, dahlia, cassava
Prop rootsAdventitious roots from the stem that brace the plantCorn, mangroves
Buttress rootsWide, plank-like flanges at the trunk baseTropical rainforest trees in shallow soil
Aerial rootsAbsorb moisture from air; covered in a spongy velamenEpiphytic orchids
PneumatophoresGrow upward out of mud to take in airBlack mangrove, bald cypress "knees" (debated)
Contractile rootsShorten to pull bulbs and corms deeperLilies, crocuses, dandelions
HaustoriaPenetrate a host's vascular tissue to steal water and foodDodder, mistletoe, broomrape
Root nodulesHouse nitrogen-fixing bacteriaLegumes (rhizobia), alders (Frankia)
Cluster (proteoid) rootsDense bottlebrush tufts that release acids to free phosphateProteaceae, white lupine, on phosphorus-poor soils

Stems

A stem is recognized by nodes (where leaves and buds attach) and the internodes between them, with a terminal bud at the tip and an axillary (lateral) bud in the angle (axil) above each leaf. An axillary bud may grow into a vegetative branch or a flowering branch. On a twig in winter, rings of bud-scale scars mark each year's starting point, leaf scars (with dots of bundle scars) mark where leaves fell, and lenticels dot the bark. Underground organs with nodes, internodes and buds are stems, not roots: ginger and iris rhizomes, potato tubers.

In a eudicot stem the vascular bundles form a ring, with cortex outside and pith inside, and a woody eudicot adds a cambium that makes annual rings and bark. In a monocot stem the bundles are scattered through the ground tissue, with no clear cortex or pith and no vascular cambium. A plant with a taproot, growth rings and bark is a woody eudicot or a conifer (gymnosperms also make wood and bark).

Growth forms: trees have one main woody trunk; shrubs have several woody stems from the base; vines climb or trail with flexible stems; lianas are woody vines; creeping plants grow flat along the ground.

Stem modificationWhat it isExample
Stolon (runner)Horizontal above-ground stem that roots at nodesStrawberry runners
RhizomeHorizontal underground stem with nodes and budsGinger, iris, bamboo, ferns, bananas
TuberSwollen tip of an underground stem (often of a rhizome or stolon), with buds ("eyes")Potato
BulbShort stem wrapped in fleshy, food-storing leavesOnion, tulip, garlic, lily
CormSwollen underground stem base, almost all stem tissue, with papery leaf basesCrocus, gladiolus, taro
Cladode (cladophyll); phyllocladeFlattened, green, leaf-like stem that photosynthesizes (cladode: one or a few internodes; phylloclade: several internodes)Asparagus fern "leaves" and butcher's broom (cladodes); prickly pear pads and Christmas cactus segments (phylloclades)
ThornSharp modified stem (it grows from an axillary bud)Hawthorn, citrus, honey locust
Stem tendrilCoiling stem that grips supportsGrape, passionflower
Succulent stemSwollen water-storing stemCacti
Storage root (for contrast)A true root swollen with foodCarrot, sweet potato

Sharp structures differ in origin: thorns are stems, spines are leaves or leaf parts (cactus spines, barberry), and prickles are outgrowths of the epidermis and cortex that snap off easily (the "thorns" of roses and blackberries).

Leaves

A typical leaf has a flat blade (lamina), a stalk (petiole) and often a pair of stipules at the petiole base; a leaf with no petiole is sessile. Grass leaves have a sheath that wraps the stem and a small ligule where blade meets sheath. The upper surface is adaxial and the lower abaxial.

  • Simple vs. compound. A simple leaf has one blade (it may be lobed, as in maple or oak, but the lobes do not reach the midrib). A compound leaf divides into separate leaflets: pinnately compound (leaflets along a central rachis: ash, walnut, rose), palmately compound (leaflets from one point: horse chestnut, buckeye, clover), or bipinnately compound (leaflets themselves divided: mimosa, honey locust). To tell a leaflet from a leaf, look for a bud: there is an axillary bud at the base of a whole leaf, never at the base of a leaflet. Compound leaves may help in hot or windy places: small leaflets shed heat quickly and flutter rather than tear in wind, light passes between them to lower leaves, and some trees (black locust, walnut) shed leaflets or whole leaves in drought.
  • Arrangement (phyllotaxy). Alternate (one leaf per node, spiraling up the stem), opposite (two per node), decussate (opposite pairs, each pair at right angles to the next, which keeps leaves from shading the ones below), and whorled (three or more per node). Spiral phyllotaxy often follows Fibonacci fractions of a turn between successive leaves (1/2, 1/3, 2/5, 3/8, 5/13…), approaching the "golden angle" of about 137.5°, which spaces leaves for minimal overlap.
  • Venation. Parallel (most monocots), netted or reticulate, either pinnate (one midrib with side veins, as in elm) or palmate (several main veins from the base, as in maple), and dichotomous (forking in twos, as in Ginkgo and many ferns).
  • Shape and margin words for identification: linear, lanceolate (lance-shaped), ovate (egg-shaped, widest below the middle), obovate (widest above), elliptic, cordate (heart-shaped), deltoid (triangular), orbicular (round), sagittate (arrowhead); margins entire (smooth), serrate (saw-toothed, teeth pointing forward), dentate (teeth pointing outward), crenate (rounded teeth), lobed and undulate (wavy).
Chart of leaf silhouettes, each labeled with its botanical term: shapes such as acicular, lanceolate, ovate, obovate, cordate, deltoid, reniform and orbicular; compound forms such as palmate, pinnate, bipinnate and trifoliate; arrangements such as alternate, opposite and whorled; and margins such as entire, serrate, dentate and crenate.
The vocabulary of leaf identification in one chart: shape, apex and base, compound leaf types, arrangement on the stem and margin. Identification keys and station questions use exactly these words.Credit: derivative work: McSush, from Leaf_morphology_no_title.png by Debivort, CC BY-SA 3.0, via Wikimedia Commons · source

More morphology terms: -foliate counts leaves (a trifoliate plant bears leaves in threes), while -foliolate counts leaflets (a trifoliolate leaf, like clover, has three leaflets), though many tests use "trifoliate" for both; peltate leaves have the petiole attached in the middle of the blade (nasturtium); perfoliate leaves surround the stem so it seems to pierce them; decurrent leaf bases run down the stem as wings; ptyxis (vernation) is how a leaf is folded or rolled in the bud, such as the coiled fiddlehead of a fern (circinate); in concaulescence an axillary branch or flower stalk is fused for some distance to the main stem, so it seems to arise above its leaf; in recaulescence a leaf or bract is fused to the axillary shoot it subtends, so the flower stalk seems to grow out of the middle of the bract (as in linden).

Leaf anatomy. Under the cuticle and upper epidermis lie the column-shaped palisade mesophyll cells (where most photosynthesis happens) and the loosely packed spongy mesophyll, whose large air spaces let CO₂ diffuse quickly to every cell and water vapor out to the stomata. Veins (vascular bundles) are wrapped in a bundle sheath. In most eudicots the stomata sit mainly on the lower surface, which is shaded, cooler and out of direct sun, so less water is lost per unit of CO₂ gained. Grasses and many other monocots with upright leaves have stomata on both surfaces. Floating leaves (water lily) have stomata only on the upper surface, the only side touching air. The leaf area index is the total one-sided leaf area divided by the ground area beneath it (8 m² of leaves over 2 m² of ground gives LAI = 4).

Cross-section of a leaf with ten numbered labels: a waxy layer on top, upper epidermis, tall palisade cells, loosely packed spongy cells, lower epidermis with a pore and two guard cells, and a vein cut in section.
A leaf in cross-section, labeled by number as tests often do. 1 cuticle, 2 upper epidermis, 3 palisade mesophyll, 4 spongy mesophyll, 5 lower epidermis, 6 stoma, 7 guard cells, 10 vein (xylem and phloem). Gas exchange happens through the stoma and the air spaces of the spongy layer; most chloroplasts sit in the palisade.Credit: Szczepan1990, CC BY-SA 2.5, via Wikimedia Commons · source

Many organs are modified for other jobs, and tests like to ask which organ a structure really is:

Leaf modificationExample
Spines (reduce water loss and deter herbivores)Cacti, barberry
TendrilsGarden pea (the tip leaflets)
Bracts (colorful leaves that attract pollinators to small flowers)Poinsettia's red "petals", flowering dogwood's white "petals"
Storage leavesOnion and garlic bulb scales; fleshy succulent leaves of aloe and jade
TrapsVenus flytrap, pitcher plants, sundews
Phyllodes (flattened petioles that replace the blade)Many Australian Acacia
Bud scalesProtect winter buds
Plantlets along the marginKalanchoe
FrondsThe large, often divided leaves of ferns (and palms)

Spore-forming bodies

The 2027 outline names spore-forming bodies alongside flowers, so expect station questions that show a moss capsule, a fern frond or a cone. Every land plant makes spores by meiosis inside a sporangium; the groups differ in where the sporangia sit and how spores are released.

GroupSpore-forming structureWhat to recognize
MossesCapsule at the tip of a stalk (seta)Lid (operculum) and a ring of teeth (peristome) that control spore release; a cap (calyptra) on young capsules
LiverwortsSmall capsules; some form gemma cups for asexual spreadElaters (spiral cells) help scatter spores
FernsSori: clusters of sporangia on the underside of fronds, often under a flap (indusium)Each sporangium has an annulus, a row of thick-walled cells that dries, bends back and snaps forward to fling spores
Horsetails and club mossesStrobili (cones) of sporangia at stem tipsHorsetail spores carry elaters; some lycophytes (spike mosses, Selaginella) make two spore sizes
Seed plantsAnthers (microsporangia) and ovules (each with a megasporangium)Pollen grains are the male gametophytes; the embryo sac in the ovule is the female gametophyte

Homospory (one spore type) is the rule in mosses, most ferns and horsetails. Heterospory (small microspores that become male gametophytes and large megaspores that become female gametophytes) evolved in Selaginella, some aquatic ferns and all seed plants. It is the step that made seeds possible.

Microscope view of a single fern sporangium, a rounded capsule ringed by a row of thick, segmented cells, with many bean-shaped spores visible inside; a pointer rests on the spores.
A fern sporangium under a compound microscope, as you might see it at a station. The segmented band around the edge is the annulus, which drives spore release as it dries; the bean-shaped bodies inside are spores.Credit: Ilse Anahi Carrasco, CC BY 4.0, via Wikimedia Commons · source

Flowers

Angiosperm flowers are built from four whorls of modified leaves on a receptacle at the tip of a flower stalk (pedicel):

  1. Sepals, together the calyx: usually green; protect the flower bud before it opens.
  2. Petals, together the corolla: usually colored and scented; attract pollinators. Calyx plus corolla is the perianth. When sepals and petals look alike (lilies, tulips) they are called tepals.
  3. Stamens, together the androecium (male): each an anther, where pollen forms, on a stalk-like filament.
  4. Carpels, together the gynoecium (female): each a stigma that receives pollen, a style, and an ovary holding ovules. A pistil is a single carpel or several carpels fused together; stigma, style and ovary make up the pistil.

Nectaries secrete nectar as a reward. In pollination, pollen moves from an anther to a stigma, never the other way.

Labeled diagram of a flower with petal (corolla), sepal (calyx), nectary and pedicel, plus enlarged views of the pistil (stigma, style, ovary with ovules) and a stamen (anther, filament).
A mature flower. The pistil (carpel) is stigma, style and ovary; the ovules inside the ovary become seeds. The stamen is filament plus anther, where pollen forms. After fertilization the ovary becomes the fruit.Credit: Mariana Ruiz LadyofHats, Public domain, via Wikimedia Commons · source
TermMeaningExample
Complete / incompleteHas all four whorls / lacks at least oneLily (complete); grass flowers (incomplete, no petals)
Perfect (bisexual) / imperfect (unisexual)Has both stamens and carpels / only one kind. Imperfect flowers are staminate (male) or pistillate (female)Rose, tomato (perfect); corn, squash, willow (imperfect)
MonoeciousSeparate male and female flowers on the same plantCorn (tassel male, ear female), squash, cucumber, oak, birch, walnut
DioeciousMale and female flowers on separate plantsHolly, willow, poplar, asparagus, spinach, kiwifruit, date palm, ginkgo (cones)
Actinomorphic (radial symmetry) / zygomorphic (bilateral)Can be cut into mirror halves along several planes / only oneButtercup, rose, lily / orchid, snapdragon, pea, mint
Superior ovary (hypogynous flower)Other parts attach below the ovaryTomato, lily, pea, citrus
Perigynous flowerA cup (hypanthium) carries the other parts around a superior ovaryCherry, plum, rose
Inferior ovary (epigynous flower)Other parts attach on top of the ovary, which is sunk in the receptacleApple, cucumber and squash, sunflower, banana, orchid, daffodil

A plant whose flowers are all perfect is neither monoecious nor dioecious in the strict sense, though some tests loosely call any plant bearing both sexes "monoecious". Fusion has its own vocabulary: connation is fusion of like parts (petals fused into a tube, as in morning glory; stamens fused by their filaments, as in mallows and legumes), and adnation is fusion of unlike parts (stamens fused to petals, as in the mint and nightshade families). A rare radially symmetrical flower on a normally zygomorphic plant (orchid, snapdragon) is called peloric.

Anther attachment to the filament is described as basifixed (attached at the anther's base, held rigid, as in many sedges and tulips), adnate (the filament runs along the back of the anther), dorsifixed (attached on the back) or versatile (attached at a single point near the middle so the anther swings freely, as in grasses and lilies; the swinging shakes pollen loose into wind or onto visiting insects). Corolla shapes have names too: campanulate (bell-shaped: bellflowers, bluebells), tubular (honeysuckle, many hummingbird flowers; foxglove's is a long, bell-mouthed tube), funnelform (morning glory, petunia), salverform (a narrow tube flaring flat: phlox), rotate (flat and wheel-like: tomato, potato), cruciform (four petals in a cross: mustards), papilionaceous (butterfly-like banner, wings and keel: peas), bilabiate (two-lipped: mints, snapdragons) and ligulate (strap-shaped: sunflower ray florets). Placentation is how ovules attach inside the ovary: marginal along one seam of a single carpel (legumes); axile on a central column where partitions meet (tomato, citrus, lily; Solanaceae, whose two carpels sit obliquely); parietal on the outer wall (mustards, violets, papaya); free-central on a free central column (pinks, primroses); basal at the bottom of a one-chambered ovary (sunflower family).

Floral formulas pack all this into one line: ⊕ or * = actinomorphic, ↑ or % = zygomorphic, ⚥ or ☿ = bisexual; K = calyx, C = corolla, P = tepals, A = androecium (stamens), G = gynoecium (carpels); numbers give counts, ∞ means many, parentheses mean the parts are fused, and a line under G means a superior ovary (a line over it, inferior). So % ☿ K(5) C(5) A4 G(2) (the mint family) reads: zygomorphic, bisexual, 5 fused sepals, 5 fused petals, 4 stamens and 2 fused carpels. Read any formula left to right the same way: a number in parentheses means those parts are fused, and A(2+2) would mean four stamens in two pairs. Family examples: mustards ⊕ ☿ K4 C4 A2+4 G(2); nightshades ⊕ ☿ K(5) C(5) A5 G(2); legumes % ☿ K(5) C5 A(9)+1 G1; lilies ⊕ ☿ P3+3 A3+3 G(3).

Inflorescences. A single flower on its stalk is solitary; a cluster of flowers on one stalk system is an inflorescence (its main stalk is the peduncle). In indeterminate (racemose) inflorescences the tip keeps growing and the lowest or outermost flowers open first; in determinate (cymose) inflorescences the tip ends in a flower that opens first.

TypeArrangementExamples
RacemeStalked flowers along an unbranched axisSnapdragon, lupine, foxglove
SpikeStalkless flowers along an unbranched axisWheat, gladiolus, plantain
Catkin (ament)Drooping spike of small unisexual flowers, usually wind-pollinatedBirch, willow, oak, walnut
SpadixFleshy spike, usually wrapped in a hood-like bract (spathe)Calla lily, jack-in-the-pulpit, Anthurium
PanicleBranched racemeOats, rice, yucca (lilac's is technically a thyrse)
CorymbFlat-topped; lower stalks longerHawthorn, yarrow (compound corymb)
UmbelStalks all from one point, like umbrella ribsCarrot family, onion, milkweed
Head (capitulum)Many stalkless florets packed on a diskSunflower, daisy, dandelion, clover
CymeDeterminate; the central flower opens firstForget-me-not, chickweed

Inflorescences can be compound: a compound umbel has umbels of umbels (carrot, dill), a compound spike has spikelets along the axis (wheat), and a thyrse has a main axis bearing small cymes (lilac, grape). A verticillaster is a false whorl formed by pairs of small cymes at each node, the typical arrangement of flowers in the mint family (Lamiaceae). A fascicle is a tight bundle of flowers (or leaves, as in pine needles) from one point. A monochasial cyme has one branch at each node: if the new branches always arise on the same side it coils into a helicoid cyme (bostryx); if they alternate sides it forms a zigzag scorpioid cyme (cincinnus), as in forget-me-not and heliotrope. A dichasium branches in two at each node. A sunflower "flower" is a head: the outer ray florets (each with one strap-shaped ligule formed from fused petals) surround hundreds of tubular disk florets, and each disk floret makes one fruit.

The ABC model of flower development. Three classes of homeotic genes (master control genes that decide which kind of organ forms in a given position), acting in overlapping zones, set the identity of the four whorls: A alone makes sepals, A + B makes petals, B + C makes stamens, and C alone makes carpels; A and C repress each other. A plant without B function makes sepals, sepals, carpels, carpels; without C, the A zone spreads and the flower repeats sepals and petals indefinitely (like the double flowers of many garden roses and camellias, which come from weakened rather than lost C function); without A, C spreads and the flower makes carpels, stamens, stamens, carpels. The genes were worked out in Arabidopsis and snapdragon. Arabidopsis thaliana (mustard family) is plant biology's model organism because it is small, has a very small genome, completes its life cycle in about six weeks, self-pollinates and makes thousands of seeds.

Inside the anther and the ovule. In each anther, diploid microsporocytes (microspore mother cells) undergo meiosis to make haploid microspores; each microspore divides once by mitosis to become a pollen grain with a large tube cell and a small generative cell. The generative cell divides to make two sperm, before or after pollination. The pollen wall's tough outer layer (exine) is made of sporopollenin, which is why pollen fossilizes so well.

An ovule hangs from a stalk (funiculus) and has one or two protective integuments with a small opening, the micropyle, at one end; the base opposite it is the chalaza, and the tissue inside is the nucellus (the megasporangium). One megasporocyte undergoes meiosis to give four megaspores; three degenerate, and the survivor divides by mitosis three times to make the embryo sac, the female gametophyte, with eight nuclei in seven cells: the egg and two synergids at the micropylar end, three antipodal cells at the chalazal end, and a large central cell with two polar nuclei.

Pollination and fertilization. A compatible pollen grain on the stigma germinates, and its pollen tube grows down through the style (by tip growth, loosening pectin as it goes) toward the ovule, guided by peptide attractants released by the synergids. It usually enters through the micropyle (porogamy), less often through the integuments (mesogamy) or the chalaza (chalazogamy). The tube bursts into a synergid and releases two sperm, and double fertilization, unique to angiosperms (gnetophytes such as Ephedra show a simpler version that makes no endosperm), follows: one sperm fuses with the egg to form the diploid zygote, and the other fuses with the two polar nuclei of the central cell to form the triploid (3n) endosperm, the food store. Afterward the zygote grows into the embryo, the integuments harden into the seed coat, the ovule becomes the seed, and the ovary ripens into the fruit.

Life-cycle diagram of a flowering plant: the adult sporophyte flower, anther and ovary, meiosis producing microspores and a megaspore, the pollen grain and embryo sac, pollination, double fertilization producing zygote and endosperm, and the seed growing into a new sporophyte.
The flowering-plant life cycle. Note the two tiny gametophytes: the pollen grain (male) and the embryo sac inside the ovule (female). Double fertilization gives a diploid zygote and a triploid endosperm.Credit: LadyofHats Mariana Ruiz, Public domain, via Wikimedia Commons · source

Fruits and seeds

A fruit is a mature, ripened ovary (sometimes with other flower parts attached) that contains the seeds. Its wall, the pericarp, has three layers: exocarp (the skin), mesocarp (often the flesh) and endocarp (the inner layer, stony in a peach pit). Fruits protect seeds and disperse them, and some aid germination (seeds that pass through an animal's gut are scarified and dropped with fertilizer). Botanically, tomatoes, cucumbers, peppers, eggplants, green beans, squash and corn kernels are all fruits; "vegetable" is a cooking word, not a botanical one. Fruits are classified first by how many flowers and carpels form them:

  • Simple fruit: from one ovary of one flower (a single carpel or several fused carpels).
  • Aggregate fruit (also called an etaerio): from many separate carpels of one flower, each forming a small fruitlet on a shared receptacle (raspberry and blackberry are aggregates of drupelets; magnolia of follicles).
  • Multiple fruit: from the ovaries of many flowers of an inflorescence fused together (pineapple, mulberry, fig, breadfruit, Osage orange).
  • Accessory (false) fruit: much of the flesh comes from tissue other than the ovary (the apple and pear from the floral cup; the strawberry from the swollen receptacle, its true fruits being the little "seeds", which are achenes).
ReferenceFruit types· 16 rows

Simple fleshy fruits first, then simple dry fruits (dehiscent ones split open; indehiscent ones do not).

16 rows
TypeDefinitionExamples
BerryWhole pericarp fleshy, usually several seedsTomato, grape, blueberry, pepper, eggplant, banana, avocado (one seed)
HesperidiumBerry with a leathery, oil-dotted rind and juice-filled sacs in segmentsOrange, lemon, lime, grapefruit
PepoBerry with a hard rind, from an inferior ovarySquash, pumpkin, cucumber, watermelon, cantaloupe
DrupeFleshy, with a single seed inside a hard, stony endocarp (pit)Peach, cherry, plum, apricot, olive, mango; coconut (fibrous drupe); almond (we eat the seed)
PomeAccessory fruit: fleshy floral cup around a papery core (the true ovary)Apple, pear, quince
LegumeDry pod from one carpel that splits along two seamsPea, bean, peanut (which ripens underground and does not split)
FollicleDry fruit from one carpel that splits along one seamMilkweed, columbine, magnolia (aggregate)
CapsuleDry fruit from several fused carpels, opening by slits, pores or a lidPoppy (pores), lily, cotton, iris, Brazil nut (seeds inside)
SiliqueTwo-valved capsule with a central partition; a short one is a silicleMustard family (cabbage, radish, Arabidopsis)
AcheneSmall, dry, one seed attached to the thin pericarp at one pointButtercup, strawberry's surface "seeds", buckwheat
CypselaAchene-like fruit from an inferior ovary, often with a pappusSunflower "seed", dandelion
Caryopsis (grain)One seed whose seed coat is fused to the pericarpWheat, corn, rice, oats: the grass family
NutHard, dry pericarp around usually one seed, from a compound ovary, often in a cup or huskAcorn, hazelnut, chestnut
SamaraWinged, dry, indehiscent fruitAsh, elm; maples make a double samara
SchizocarpSplits into one-seeded partsCarrot, parsley, dill; maple's paired samaras
SyconiumMultiple fruit: a hollow fleshy receptacle lined with tiny flowers, pollinated by fig waspsFig

A peach is therefore a simple, fleshy drupe; a raspberry is an aggregate of drupelets; a pineapple is a multiple fruit; an apple is an accessory pome. Many "nuts" in the kitchen are not botanical nuts: peanuts are legume seeds, almonds and pecans are drupe seeds or stones, and Brazil nuts are seeds from a capsule. Whether a fruit ends up fleshy or dry depends mainly on how its pericarp layers develop, in particular how much they lignify. Seedless fruits come from parthenocarpy (fruit set without fertilization, natural in bananas and navel oranges, or induced with auxin or gibberellin sprays) or from sterile triploids (bananas, seedless watermelons). In stenospermocarpy pollination and fertilization happen but the embryos abort early, leaving tiny seed traces (Thompson Seedless and most seedless table grapes). In some tropical fruits the part we eat is an aril, a fleshy outgrowth around the seed: lychee, longan, rambutan, mangosteen and ackee (and the red cup of a yew); the juicy pomegranate "seed" coat is a related fleshy seed coat (sarcotesta).

Seed structure. A seed has three parts: a seed coat (testa, from the integuments), an embryo, and stored food (endosperm or cotyledons). On the coat, the hilum is the scar where the seed was attached to its stalk (funiculus), and the micropyle is the tiny pore beside it where water first enters. The embryo has a radicle (embryonic root), hypocotyl, epicotyl with the plumule (first shoot and leaves) and cotyledons (seed leaves). Endosperm usually starts as a free-nuclear (coenocytic) tissue, its nuclei dividing without cell walls, before walls form; coconut water is liquid free-nuclear endosperm and the white coconut meat is the cellular endosperm. In beans and peas the cotyledons absorbed the endosperm as the seed matured, so they are fat food stores (an exalbuminous seed); in corn, wheat and castor bean the endosperm remains (an albuminous seed). A grass grain adds the scutellum (its single cotyledon, which absorbs food from the endosperm), the coleoptile (sheath over the shoot) and coleorhiza (sheath over the radicle), and an aleurone layer around the endosperm. Flour is ground endosperm; whole-wheat flour also includes the bran (pericarp, seed coat and aleurone) and germ (embryo).

Two seed diagrams with lettered parts: seed 1 opens into two large cotyledons, seed 2 has one cotyledon beside a block of endosperm.
Seed 1 is a dicot (two cotyledons, B), seed 2 a monocot (one cotyledon, B, plus endosperm, F). In both, A is the seed coat, D the plumule (first shoot) and E the radicle (first root). In grasses the single cotyledon is the scutellum, which absorbs food from the endosperm during germination.Credit: Cbenson1919, CC BY-SA 3.0, via Wikimedia Commons · source

Seed dispersal moves seeds away from the parent, where they would compete with it and with each other:

AgentAdaptationsExamples
WindWings, plumes, parachutes, tiny dust-like seeds, tumbling plantsMaple and ash samaras (a flattened, wing-like pericarp that spins), dandelion pappus, milkweed silk, orchid seeds, tumbleweed
WaterBuoyant, waterproof fruits with air spacesCoconut, water lily, mangroves
Animals, insideFleshy, colorful, sweet fruits whose seeds survive digestionBerries, cherries; birds and mammals drop seeds far away
Animals, outsideHooks, barbs and sticky coats that cling to fur and feathersBurdock (the inspiration for Velcro), cocklebur, beggar's ticks
Hoarding animalsNutritious nuts buried and forgottenAcorns and squirrels or jays
AntsAn oily food body (elaiosome) on the seedTrilliums, violets, bloodroot
Self (explosive)Pods that dry or build pressure and burstImpatiens (touch-me-not), witch hazel, squirting cucumber

Growth and differentiation

Meristems and the root tip

Plants grow from meristems, tissues of undifferentiated, dividing cells, and they keep growing all their lives (indeterminate growth). That is why growth happens only at particular places: the tips of roots and shoots, and the cylinders of cambium in woody stems.

  • Apical meristems at root and shoot tips make the plant longer: primary growth, which every plant has. The shoot apical meristem also lays down leaf primordia and axillary buds at regular positions.
  • Lateral meristems make it thicker: secondary growth. The vascular cambium adds secondary xylem inward and secondary phloem outward; the cork cambium (phellogen) makes cork outward, building the protective periderm (outer bark). Primary and secondary growth run at the same time in a woody plant: the tips lengthen while older parts thicken.
  • Intercalary meristems at the base of grass leaves and internodes let a lawn regrow after mowing.

Just behind the apical meristem, cells sort into three primary meristems that build the three tissue systems:

Primary meristemBecomesTissue system
ProtodermEpidermis (with guard cells, trichomes, root hairs)Dermal
Ground meristemCortex and pith: parenchyma, collenchyma, sclerenchymaGround
ProcambiumPrimary xylem and primary phloem (and, in eudicot stems, part of the vascular cambium between them)Vascular

A root tip shows growth and differentiation in sequence. The root cap protects the tip as it pushes through soil, secretes slimy mucigel, and senses gravity, steering the root. Behind the cap lies the zone of cell division (the meristem), then the zone of elongation (cells lengthen many times over and push the tip forward; this is where the root actually grows longer), then the zone of maturation (cells differentiate into xylem, phloem and epidermis, and root hairs appear). Lateral roots start deep inside, in the pericycle, and push out through the cortex. In roots that undergo secondary growth, the pericycle also forms the first cork cambium and part of the vascular cambium; most stems have no distinct pericycle (the term is used there only loosely for the outer edge of the vascular cylinder). Differentiation is the process by which genetically identical cells take on different structures and jobs. Many mature plant cells keep the ability to dedifferentiate and regenerate a whole plant (totipotency), which is what makes cuttings and tissue culture work. A tree grows upward only at its tips, so a nail driven into a trunk 5 feet up stays 5 feet up for as long as the tree lives.

The embryo in a seed already has the plant's axis: the radicle (embryonic root, the first organ to emerge at germination), the hypocotyl (stem below the cotyledons), the epicotyl (stem above the cotyledons) tipped by the plumule (the first shoot and leaves), and one or two cotyledons. Grasses add sheaths over both ends: the coleoptile over the shoot and the coleorhiza over the radicle.

Plant hormones

Hormones coordinate growth and differentiation. They act at very low concentrations, often far from where they are made, and usually in balance with one another, so the ratio between two hormones often matters more than either amount.

HormoneMade in / chemistryMain effectsTypical test link
Auxin (IAA, indole-3-acetic acid)Shoot tips, young leaves, developing seeds; made from tryptophanCell elongation; phototropism and gravitropism; apical dominance; adventitious and lateral root initiation; vascular differentiation; fruit set and growth; delays leaf abscissionBending toward light; rooting powders (IBA, NAA); the herbicide 2,4-D (a synthetic auxin that kills broadleaf weeds but spares grasses)
Gibberellins (GA)Young leaves, shoot tips, seeds; a terpenoidStem (internode) elongation and bolting; breaks seed dormancy and triggers germination; mobilizes stored food in cereal seeds; enlarges fruit; can substitute for cold or long days in some plantsDwarf mutants (Green Revolution wheat); bigger seedless grapes; malting barley
Cytokinins (zeatin; synthetic kinetin, BA)Mainly root tips, carried up in the xylemCell division (with auxin); releases lateral buds; delays leaf senescence; promotes chloroplast developmentCytokinin-to-auxin ratio in tissue culture: high → shoots, low → roots
Abscisic acid (ABA)Leaves (especially wilting ones), roots, seeds; a terpenoidCloses stomata under water stress; maintains seed and bud dormancy; general stress hormone; inhibits growthDrought responses; mutants lacking ABA germinate on the parent (vivipary)
EthyleneAlmost all tissues, especially ripening fruit, aging flowers, wounded or stressed tissue; a gas (from the amino acid methionine)Fruit ripening (positive feedback); leaf and fruit abscission; senescence; the triple response of seedlings; flooding responses (aerenchyma)"One bad apple" ripening the bowl; ripening rooms for bananas; 1-MCP blocks it
BrassinosteroidsThroughout; steroidsCell elongation and division, xylem differentiation, light responsesDwarf mutants that look light-grown (short, de-etiolated) even in darkness
Jasmonates (jasmonic acid)Wounded tissueDefense against herbivores and necrotrophic pathogens; wound signalingInsect chewing triggers protease inhibitors
Salicylic acidInfected tissueSystemic acquired resistance to pathogensThe willow compound behind aspirin
StrigolactonesRoots; from carotenoidsInhibit shoot branching; signal mycorrhizal fungiAlso trigger germination of parasitic witchweed (Striga)
Florigen (FT protein)Leaves, under the right photoperiodMoves through the phloem to the shoot apex and switches it to floweringThe long-sought flowering signal, identified in the 2000s

Auxin in detail. Auxin moves from cell to cell in one direction, from shoot tips toward the base (polar transport), because auxin efflux carriers (PIN proteins) sit on the lower side of each cell; it also travels long distances in the phloem. It makes cells elongate by the acid-growth mechanism: auxin activates plasma-membrane proton pumps (H⁺-ATPases), the wall acidifies, wall-loosening proteins (expansins) become active, and turgor stretches the loosened wall. The pumps use ATP, so a cell starved of oxygen (and therefore of respiratory ATP) cannot respond. At the gene level, auxin binds its receptor (TIR1), which tags Aux/IAA repressor proteins for destruction; with the repressors gone, ARF transcription factors switch on auxin-response genes. Auxin also patterns the plant: leaf arrangement (phyllotaxy), vein and vascular differentiation, root initiation and fruit development. Spraying tomato flowers with an auxin "blossom set" product makes fruit set without pollination (parthenocarpy).

Apical dominance is the shoot tip's suppression of the axillary buds below it. Auxin flowing down from the tip (with strigolactones) keeps the buds dormant; cytokinin from the roots promotes their growth. Remove the tip (pruning, pinching or grazing) and the auxin supply drops, so side buds grow and the plant bushes out.

Gibberellin in detail. Gibberellins were discovered in Japan through the "foolish seedling" (bakanae) disease of rice, in which the fungus Gibberella fujikuroi secretes GA and infected seedlings grow absurdly tall and fall over. In a germinating cereal grain, the embryo releases GA, which diffuses to the aleurone layer (the protein-rich outer layer of the endosperm) and induces the enzyme α-amylase; the enzyme digests endosperm starch to sugars that feed the seedling. Brewers exploit this in malting.

Ethylene in detail. Climacteric fruits (banana, apple, pear, tomato, avocado, peach) ripen after picking with a burst of respiration and ethylene; each ripening fruit makes ethylene that speeds ripening in itself and its neighbors (positive feedback). Non-climacteric fruits (citrus, grapes, strawberries, cherries) have no ethylene burst and do not get sweeter after harvest. A seedling that meets an obstacle such as a stone makes ethylene and shows the triple response: its stem slows elongation, thickens and grows sideways, letting it get around the obstacle. Autumn senescence is triggered mainly by shortening days (longer nights) and falling temperatures. Chlorophyll is broken down and its nitrogen and magnesium are moved back into the stem, unmasking the yellow and orange carotenoids that were there all along; many trees also make new red anthocyanins in the fall, most brightly after sunny days and cool (not freezing) nights. In autumn, falling auxin from an aging leaf and rising ethylene trigger enzymes in the abscission zone at the base of the petiole that dissolve the cell walls of a separation layer, while a protective layer of corky cells seals the scar.

Tropisms and other movements

A tropism is directional growth toward (positive) or away from (negative) a stimulus. It is growth, so it is slow and permanent.

TropismStimulusExample and mechanism
PhototropismLight (blue, sensed by phototropins)Shoots bend toward light: auxin moves to the shaded side, those cells elongate more
Gravitropism (geotropism)GravityShoots grow up (negative), roots down (positive)
ThigmotropismTouchTendrils and twining stems coil around supports
HydrotropismWaterRoots grow toward moist soil
ChemotropismChemicalsPollen tubes grow toward the ovule, guided by peptide signals from the synergids

Gravitropism and the statolith hypothesis. Gravity is sensed by statoliths, dense starch-filled amyloplasts, in gravity-sensing cells (statocytes): the columella cells of the root cap and in the endodermis of shoots. When a root is tipped sideways, the statoliths settle to the new lower side of the cells; the PIN3 auxin carriers move to that lower side, so auxin flows to the lower flank of the root. In roots, high auxin inhibits elongation, so the lower side grows less and the root curves down. In shoots, auxin promotes elongation, so the lower side grows more and the shoot curves up. In shoots the statocytes are in the endodermis (the innermost layer of the cortex, the "starch sheath"); in grass seedlings the coleoptile tip is needed for the full bending response, as it is for phototropism.

Auxin's discovery is a classic experiment sequence. Charles and Francis Darwin (1880) showed that a grass coleoptile bends toward light only if its tip is uncovered, so the tip senses light and sends a signal down. Peter Boysen-Jensen (1913) showed the signal passes through gelatin but not through mica, so it is a chemical. Árpád Paál (1919) placed a cut tip off-center on the stump in darkness and got bending away from that side. Frits Went (1926) collected the chemical in agar blocks, which alone made decapitated coleoptiles bend; the name auxin was coined a few years later (Kögl and Haagen-Smit, 1931).

A nastic movement is a response whose direction does not depend on where the stimulus comes from; most are fast, reversible turgor changes in a hinge-like pulvinus at the leaf base. Nyctinasty is the nightly folding of leaves in many legumes ("sleep movements"); thigmonasty (seismonasty) is the folding of sensitive-plant (Mimosa pudica) leaflets when touched and the snapping of a Venus flytrap. Thigmomorphogenesis is a slower, lasting response to repeated touch or wind: plants that are rubbed, shaken or wind-blown grow shorter and stockier (ethylene is involved), which is why outdoor-hardened seedlings are sturdier than greenhouse ones. Heliotropism (solar tracking) is the daily turning of leaves or flowers to follow the sun, driven by pulvini in many legumes and by stem growth in young sunflowers (mature sunflower heads stop tracking and face east). A taxis is different again: movement of a whole motile organism or cell toward or away from a stimulus, such as phototaxis of swimming Chlamydomonas or chemotaxis of fern and moss sperm toward archegonia.

Light, day length and timing

Plants read light through photoreceptors. Phytochrome exists in two forms that convert into each other: Pr absorbs red light (about 660 nm) and becomes Pfr, the active form; Pfr absorbs far-red light (about 730 nm) and reverts to Pr (it also drifts back slowly in darkness). Sunlight has more red than far-red, so daytime leaves are rich in Pfr. Phytochrome controls seed germination in light-requiring seeds such as lettuce (red promotes, far-red cancels, and the last flash wins), de-etiolation of seedlings reaching light, shade avoidance (canopy shade is rich in far-red, so plants stretch), and flowering time. Cryptochromes and phototropins absorb blue light and control phototropism, stomatal opening, de-etiolation and the circadian clock. A seedling in the dark is etiolated: long, pale and spindly, with tiny leaves and a hooked tip (the apical hook, formed by the hypocotyl in beans and by the epicotyl in peas, protects the shoot tip while it pushes through soil). A succulent kept in dim light stretches the same way; brighter light, especially blue and red, keeps it compact.

Photoperiodism is the flowering response to day length, which plants actually measure as the length of the uninterrupted night.

TypeFlowers whenExamplesEffect of a flash of red light in the middle of the night
Short-day (long-night)Nights are longer than a critical lengthPoinsettia, chrysanthemum, soybean, cocklebur, rice, kalanchoePrevents flowering (the long night is broken)
Long-day (short-night)Nights are shorter than a critical lengthSpinach, lettuce, radish, wheat, clover, irisPromotes flowering
Day-neutralRegardless of day length, once matureTomato, corn, cucumber, dandelion, roseNo effect

A far-red flash right after the red flash cancels the red flash's effect. So a short-day plant needing at least 14 hours of darkness, given a 16-hour night interrupted by red then far-red light, still flowers; given 13 hours of darkness, or a night broken by a final red flash, it does not.

Vernalization is the induction of flowering by a long cold period: winter wheat and many biennials (carrots, cabbage, foxglove) will not flower without a winter. Chilling hours do the same for the dormant buds of many fruit trees. The circadian clock runs on a roughly 24-hour cycle, timing stomatal opening and leaf movements and letting the plant compare night length with an internal standard. Photoperiodic responses vary: some plants flower after a single inductive night (cocklebur), others need many; young plants are often unresponsive until they reach a minimum age (juvenility); temperature modifies the response; and populations from higher latitudes have different critical night lengths than those from lower latitudes. FT protein (florigen) also influences tuber formation and bud dormancy.

Germination and dormancy

Germination is the resumption of growth by a seed embryo, ending when the radicle emerges. It starts with imbibition, the rapid uptake of water by the dry seed, which activates enzymes and respiration; GA then mobilizes stored food (via α-amylase in cereals). Seeds need water, oxygen and a suitable temperature; some also need light (lettuce) or darkness, while many germinate without light at all. In epigeal germination the hypocotyl lifts the cotyledons above ground (beans, sunflowers); in hypogeal germination the cotyledons stay below ground (peas, corn, oaks).

Dormancy keeps a viable seed from germinating even when conditions seem right, so it waits for a season when the seedling can survive. Dormancy has several causes, each with a matching treatment:

CauseHow it is brokenPractice name
Hard, water-tight seed coat (physical)Nicking, sanding, acid, hot water, fire, passage through an animal gutScarification
Physiological dormancy (high ABA in the embryo)A period of moist cold, often around 40 °F for one to three months (some species need warm then cold)Stratification (cold-moist; black-eyed Susan, many trees)
Shallow physiological dormancy that fades with dryingDry storage for weeks or monthsAfter-ripening
Chemical inhibitors in the seed coat or fruitWashed out by rain, so desert seeds wait for a soaking rain big enough for a seedling to surviveLeaching
Light requirementRed light (phytochrome) near the soil surfacePhotoblastic seeds
Fire cuesHeat opens serotinous cones (lodgepole and jack pine); chemicals in smoke trigger many chaparral seedsFire-adapted germination

A seed that is not dormant but simply lacks water, oxygen or warmth is quiescent: it germinates as soon as conditions allow. True dormancy blocks germination even under good conditions until a specific cue (cold, light, a broken coat, leaching) is met. Buds go dormant too: shortening days and ABA trigger winter dormancy in temperate trees, and chilling hours later release it.

Woody and herbaceous growth

Woody plants keep a vascular cambium and cork cambium active for years, so they lay down wood and bark and grow thicker each season. Each year's wood forms an annual ring: wide, thin-walled earlywood (springwood) cells formed when water is plentiful, and narrow, thick-walled latewood (summerwood) cells formed later in the season. The visible ring is the sharp boundary where small latewood cells meet the next spring's large earlywood cells. Wide rings record good growing years; narrow rings record drought or cold, which is the basis of dendrochronology (tree-ring dating). Tropical trees with no cold or dry season may show no clear rings.

In a trunk cross-section, from the center out: pith (in young stems), heartwood (older, inner, nonconducting wood, often darker because it fills with resins, tannins and other extractives; vessels may be plugged by tyloses, balloon-like outgrowths of neighboring cells that also wall off infections), sapwood (younger, outer wood that still conducts water), the vascular cambium (the thin layer that divides wood from bark), secondary phloem (inner bark, carrying sugar), the cork cambium and cork (outer bark). Everything outside the vascular cambium is bark, so stripping a ring of bark (girdling) cuts the phloem and starves the roots, killing the tree. Girdling a single branch traps the sugar made by its leaves above the cut, so fruits on that branch grow larger and sweeter; growers use a thin girdle on grapevines and some fruit trees for exactly this effect, and the wound heals over before the roots suffer. Wood is mostly cellulose (about 40 to 50% of dry mass), hemicellulose (roughly 20 to 30%) and lignin (roughly 20 to 30%, usually higher in softwoods than hardwoods). Reaction wood forms in leaning stems and branches: conifers make compression wood on the lower side, pushing the stem up; angiosperm trees make tension wood on the upper side, pulling it up. In an older tree, secondary xylem (wood) is by far the thickest layer; the living phloem and bark form a thin outer skin, because the cambium adds much more xylem than phloem each year and old phloem is crushed and shed.

Herbaceous plants have little or no secondary growth; their stems are soft and green and often die back each year. Lifespan categories (annual, biennial, perennial) cut across this (see Woody vs. herbaceous and life spans). Monocot "trees" such as palms thicken without a true vascular cambium, so they lack annual rings.

Transport and storage

Two separate pipelines run through a vascular plant. Xylem carries water and dissolved minerals one way, up from roots to leaves, driven by transpiration (cohesion-tension). Phloem carries sugars and other organic molecules (amino acids, hormones such as auxin, some viruses) in either direction from sources to sinks, driven by pressure flow. Xylem is dead at maturity; phloem must be alive.

XylemPhloem
CarriesWater and minerals (and cytokinins from roots)Sucrose, amino acids, hormones, signals
DirectionUpward onlyBoth ways, source → sink
Conducting cellsTracheids and vessel elements, dead, lignifiedSieve-tube elements, living (no nucleus), with companion cells
Driving forceTension from transpiration (negative pressure); root pressure at nightPositive pressure from osmotic loading at the source
ModelCohesion-tensionPressure-flow (mass flow)

Water and minerals

Water potential (Ψ) measures water's tendency to move, in units of pressure: pure water at atmospheric pressure is 0, and dissolved solutes or tension make it negative. Water always moves from higher (less negative) to lower (more negative) Ψ, and the steepest drop is from the leaf to the air. The pathway runs soil → root hair → cortex → endodermis → xylem → leaf → stomata → air. In the cortex, water travels through cell walls and the spaces between cells (the apoplastic route), through cytoplasm linked by plasmodesmata (the symplastic route), and by crossing membranes from cell to cell (the transmembrane or transcellular route). At the endodermis the Casparian strip blocks the wall route, so everything entering the xylem must cross a living membrane, letting the root choose which ions enter and stopping water and solutes from leaking back out. Root cells actively pump in mineral ions, which lowers the root's water potential so water follows by osmosis; that is how water enters a root but does not leave it.

A cell placed in a solution comes to equilibrium when its Ψ equals the solution's. In a classic lab, potato cores are soaked in a sucrose series; the concentration at which their mass does not change has the same Ψ as the potato tissue.

Cohesion-tension. Water evaporating from the leaf (transpiration) pulls the xylem column upward under tension. Water molecules cohere to each other through hydrogen bonds and adhere to the hydrophilic xylem walls, so the column moves as one unbroken thread from leaf to root. An air bubble (cavitation or embolism) breaks the column. At night, when transpiration stops, roots that keep pumping ions can push water up a short way by root pressure, which forces droplets out of hydathodes at the leaf margins (guttation). The transpiration stream also carries minerals up and cools the leaf as water evaporates.

TranspirationGuttation
Form lostWater vaporLiquid droplets (with dissolved salts)
WhereMostly stomata (and a little through the cuticle)Hydathodes at leaf tips and margins
WhenDaytime, stomata openNight or early morning, humid air, moist soil
Driving forceEvaporation and tension (negative pressure)Root pressure (positive)
Controlled?Yes, by guard cellsNo

Transpiration loses enormous amounts of water: the large majority of the water a plant takes up (well over 90%) leaves through the stomata as vapor. It is the unavoidable cost of opening stomata to take in CO₂, but it also cools leaves and moves minerals upward. Rate factors:

FactorEffect on transpirationWhy
Light↑Stomata open in light; leaf warms
Temperature↑Warm air holds more water vapor, so the gradient from leaf to air steepens
Humidity↓ when humidA smaller difference in water vapor between leaf and air
Wind↑Blows away the humid boundary layer next to the leaf
Soil water↓ when dryWilting and ABA close stomata
Internal CO₂↓ when highHigh CO₂ closes stomata (rising atmospheric CO₂ lowers transpiration)
Leaf traits↓Thick cuticle, sunken stomata, hairs, small or rolled leaves, fewer stomata

Designing a plant experiment. Tests often ask you to design or critique one (for example, the effect of a hormone, fertilizer or light color on growth). Change one independent variable across a series of treatment levels (a concentration series such as 0, 1, 10 and 100 mg/L, where 0 is the control); keep everything else constant (species and age of plants, pot size, soil, water, light, temperature); measure a dependent variable that reflects growth (height, leaf number or area, fresh or better dry mass, root length, germination percentage); use replicates (several plants per treatment, randomly placed) so one odd plant does not decide the result; and report means with variation. Any accident that affects one group (a pot knocked over, roots disturbed) adds an uncontrolled variable, so that plant's trial should be restarted or excluded. A transpiration experiment is a standard design question: the independent variable is the factor you change (humidity, light, wind from a fan), the dependent variable is water loss per time per leaf area, and controls keep everything else equal (species, leaf area, temperature, soil water). Expect the highest rate at low humidity, bright light, warm temperature and strong wind.

Minerals reach the root by diffusion and mass flow in soil water, and mycorrhizal fungi, which associate with about 80 to 90% of land plants, extend the absorbing surface far beyond the root, improving phosphorus and water uptake in exchange for sugar. Evapotranspiration is the total water returned to the air from a landscape: evaporation from soil and water surfaces plus transpiration from plants.

Gases

Leaves exchange CO₂ and O₂ through stomata (singular stoma, also stomate). Each stoma is a pore between two guard cells, often flanked by subsidiary cells. When guard cells actively take in potassium ions (K⁺, with chloride and malate), their water potential falls, water enters, turgor rises, and because their inner walls are thicker and their cellulose microfibrils run radially, the swelling cells bow apart and open the pore. Losing K⁺ reverses this. Blue light (sensed by phototropins) and low internal CO₂ open stomata; ABA, high internal CO₂, darkness, water stress and very high temperatures close them.

Diagram of guard cells in two states: swollen and bowed apart with the pore open, and limp with the pore closed.
Turgor drives the mechanism. Potassium ions moving into the guard cells draw water in, the cells swell, and the pore opens; the reverse closes it.Credit: Ali Zifan, CC BY-SA 4.0, via Wikimedia Commons · source

Stems with bark breathe through lenticels, loose patches in the periderm. Roots and every living cell need O₂ for respiration, which is why waterlogged soil kills many plants. Wetland plants cope with aerenchyma, tissue with large air channels that carry O₂ down to submerged roots, and mangroves with pneumatophores. Gas moves inside the leaf by diffusion through the air spaces of the spongy mesophyll.

Sugars and storage

Sugar (mostly sucrose) moves in the phloem from a source (a mature, photosynthesizing leaf, or a storage organ being emptied) to a sink (roots, fruits, seeds, growing tips, young leaves, storage organs being filled). The pressure-flow (mass-flow) model, proposed by Ernst Münch in 1930, explains it: companion cells load sucrose into sieve tubes at the source (often actively, using a proton gradient); the high sugar concentration draws water in from the neighboring xylem by osmosis and raises the pressure; at the sink, sugar is unloaded and water leaves, lowering the pressure; sap flows from high to low pressure through the sieve plates. Phloem can run in either direction depending on where sources and sinks are; xylem runs only upward. Aphids, whose mouthparts tap single sieve tubes, were used to sample phloem sap and prove the pressure. Loading follows one of three routes: apoplastic loading, in which sucrose leaves mesophyll cells into the cell walls and is pumped into companion cells by H⁺-sucrose symporters (many crops); symplastic loading through plasmodesmata; and polymer trapping, in which sucrose diffusing into specialized intermediary cells is built into larger sugars (raffinose and stachyose) too big to diffuse back.

Plants store energy mainly as starch (in amyloplasts of roots, tubers, seeds and stem pith), as sugars in vacuoles (sugarcane, sugar beets), and as oils in seeds (sunflower, canola). The same storage organ can be a sink in one season and a source in the next: a potato tuber fills in summer and feeds the new shoots the following spring.

Major groups of plants

The 2027 rules name four contrasts (algae vs. land plants, monocots vs. dicots, embryophytes vs. cryptogams, woody vs. herbaceous) and ask for the differences between the major taxonomic groups. The section starts with the algae vs. land plants and embryophyte vs. cryptogam contrasts, then gives an overview table and the life-cycle figure, and then a subsection for each group with the details tests ask.

Algae vs. multicellular land plants

"Algae" is an informal word for photosynthetic organisms that are not land plants. It covers single cells (Chlamydomonas, diatoms), colonies (Volvox) and large multicellular seaweeds (kelp), and it spans several unrelated lineages. Only the green algae are close relatives of plants; red algae are more distant, and brown algae, diatoms and golden algae belong to a different lineage altogether (the stramenopiles, which got their chloroplasts by secondary endosymbiosis). "Blue-green algae" are cyanobacteria, which are bacteria. Tests tell algal groups apart by pigments and storage products:

GroupPigments besides chlorophyll aFood reserveWall and other featuresExamples
Green algae (Chlorophyta and charophytes)Chlorophyll b, carotenoidsStarch, made inside the chloroplastCellulose walls; the group closest to land plants (the most "advanced" algae)Chlamydomonas, Volvox, Ulva (sea lettuce), Spirogyra, Chara (stonewort)
Red algae (Rhodophyta)Phycobilins (phycoerythrin, phycocyanin)Floridean starch (in the cytoplasm)No flagellated stages at all; can live deep, using green-blue light; walls yield agar and carrageenanPorphyra/Pyropia (nori), coralline algae
Brown algae (Phaeophyceae)Chlorophyll c, fucoxanthinLaminarin and mannitolWalls with alginate; large kelps have a holdfast, stipe, blades and gas-filled floats (pneumatocysts)Kelp (Macrocystis), rockweed (Fucus), Sargassum
Diatoms (Bacillariophyta)Chlorophyll c, fucoxanthinChrysolaminarin and oilsGlassy two-part silica shells (frustules); a major share of ocean photosynthesis; fossil shells form diatomaceous earthMarine and freshwater plankton
Golden and yellow-green algae (Chrysophyta, Xanthophyta)Chlorophyll c; fucoxanthin in golden algae, little or none in yellow-green algaeChrysolaminarin and oilsMostly freshwaterVaucheria (a coenocytic yellow-green alga)
DinoflagellatesChlorophyll c, peridininStarchTwo flagella in grooves; red tides; zooxanthellae that live inside coralsKarenia
EuglenoidsChlorophyll bParamylonNo wall (a flexible pellicle); flagellum and eyespotEuglena
Cyanobacteria (prokaryotes)PhycobilinsGlycogen-like starchSome fix nitrogen in heterocysts; the ancestors of chloroplastsNostoc, Anabaena

Algal bodies come in five plans: unicellular (Chlamydomonas, Euglena, diatoms), colonial (Volvox, a hollow ball of hundreds to thousands of cells with some division of labor, usually treated as the threshold of multicellularity), filamentous (Spirogyra, an unbranched chain of cells with spiral chloroplasts), sheet-like or bladed (Ulva, sea lettuce, two cells thick; kelps) and coenocytic (below). Green algae show every type of gamete pairing: isogamy (two gametes of the same size and shape, both swimming, as in many Chlamydomonas), anisogamy (two swimming gametes of different sizes) and oogamy (a large, non-motile egg and a small, swimming or carried sperm, as in Volvox, Oedogonium, Chara and all land plants). A coenocyte is a multinucleate cell: many nuclei share one cytoplasm without walls between them, as in Vaucheria, the green alga Caulerpa and many water molds.

Land plants evolved from freshwater charophyte green algae more than 470 million years ago. Charophytes and land plants share chlorophylls a and b, starch storage and cellulose walls (with all green algae), plus traits found only in this pair: rosette-shaped cellulose-synthesizing complexes in the plasma membrane, a phragmoplast that builds the new cell wall during cell division, sporopollenin, a tough polymer that coats charophyte zygotes and plant spores and keeps them from drying out, peroxisome enzymes that help handle photorespiration, and similar flagellated sperm.

FeatureAlgaeLand plants (embryophytes)
BodySingle cells, colonies or a thallus without true roots, stems or leaves; a holdfast anchors seaweedsOrgans (roots, stems, leaves) in vascular plants; rhizoids anchor bryophytes
EmbryoNot retained; zygote is released or develops freelyMulticellular, dependent embryo develops inside the parent's tissue
Gamete-making organsUsually single cellsMulticellular gametangia with a protective jacket: archegonia (eggs) and antheridia (sperm)
SporesOften unwalled, swimmingWalled spores with sporopollenin, made in multicellular sporangia
GrowthDiffuse or at the tipsApical meristems at shoot and root tips
Life cycleVariedAlternation of generations with a multicellular haploid and diploid stage
Water loss protectionLittle or noneWaxy cuticle (cutin); stomata in most groups
HabitatMostly aquaticMostly terrestrial

The bolded traits in the land-plant column (alternation of generations with dependent embryos, walled spores in sporangia, multicellular gametangia, apical meristems) are the derived traits that define land plants. Life on land offered more light (unfiltered by water), freely available CO₂, minerals from weathered rock, and at first few herbivores or pathogens. It also demanded new solutions to drying out (cuticle, stomata, sporopollenin), support (lignin), moving water (vascular tissue), getting sperm to egg without swimming (pollen) and protecting the embryo (seeds). Mycorrhizal fungi, present in the earliest land-plant fossils, helped the first plants take up water and minerals before true roots existed.

Embryophytes vs. cryptogams

These are two older terms that overlap, which makes them easy to confuse. Embryophytes are the land plants: every group whose embryo develops inside the parent (mosses, liverworts, hornworts, ferns and their allies, gymnosperms and angiosperms). Being an embryophyte is what makes something a "true plant" (kingdom Plantae in the narrow sense). Cryptogams ("hidden reproduction") is a traditional name for organisms that reproduce by spores and have no flowers or seeds: algae, bryophytes and ferns (older texts also included fungi and lichens). The opposite term is phanerogams, the seed plants. So a fern is both an embryophyte and a cryptogam, a green alga is a cryptogam but not an embryophyte, and a pine is an embryophyte but not a cryptogam. Keeping the zygote and young embryo inside the archegonium protects it from drying and UV light and lets the parent feed it, a key advantage on land.

The major taxonomic groups

GroupExamplesVascular tissueDominant generationSeedsKey test features
BryophytesMosses, liverworts, hornwortsNoneGametophyteNone (spores)Swimming sperm need water; the sporophyte stays attached to and fed by the gametophyte
Seedless vascular plantsFerns, horsetails, club mossesYesSporophyteNone (spores)Free-living gametophyte (prothallus); swimming sperm
GymnospermsConifers, cycads, ginkgo, gnetophytesYesSporophyteNaked (not enclosed in an ovary)Cones; mostly wind pollination
AngiospermsGrasses, roses, legumes, sunflowersYesSporophyte (gametophytes microscopic)Enclosed in a fruitFlowers; double fertilization; fruit

Every land plant alternates between a haploid gametophyte (n, makes gametes by mitosis) and a diploid sporophyte (2n, makes spores by meiosis). One diploid spore mother cell (sporocyte) in a sporangium undergoes meiosis to give four haploid spores; each spore grows into a gametophyte; gametes fuse into a diploid zygote; the zygote grows into the next sporophyte. Spores, pollen, eggs, sperm and gametophytes are haploid; zygotes, embryos and sporophytes are diploid. The trend across the table is a shrinking gametophyte: large and free-living in mosses, small but independent in ferns, microscopic and dependent on the sporophyte in seed plants. Other evolutionary trends run the same direction: from homospory to heterospory, from swimming sperm to pollen, from spores to seeds, and from no vascular tissue to tracheids and then vessels.

Mitosis copies a cell into two genetically identical cells with the same chromosome number (growth, repair, asexual reproduction, and making gametes from a haploid gametophyte); meiosis halves the chromosome number and shuffles alleles, giving four genetically different haploid cells. In animals meiosis makes gametes; in plants it makes spores.

Life-cycle diagram showing a haploid gametophyte and a diploid sporophyte alternating through meiosis and fertilization.
Alternation of generations. Meiosis makes spores, spores grow into gametophytes, gametes fuse into a zygote, and the zygote grows into the sporophyte. Which generation is the large, visible plant depends on the group.Credit: Peter coxhead, Public domain, via Wikimedia Commons · source

Order of appearance in the fossil record (oldest first): bryophyte-grade plants (liverworts are often placed first) → lycophytes → ferns and horsetails → seed ferns and gymnosperms → angiosperms. All vascular plants and some extinct relatives form the polysporangiophytes, plants whose sporophytes branch and bear many sporangia; bryophytes, with a single unbranched sporophyte and one capsule, are outside this group. Plants with vascular tissue are tracheophytes (vascular plants), which include the lycophytes, ferns and horsetails (together sometimes called pteridophytes), gymnosperms and angiosperms.

Bryophytes: liverworts, mosses and hornworts

Bryophytes are small, nonvascular land plants of damp places. The green, leafy or ribbon-like plant you see is the gametophyte; it is anchored by rhizoids (not true roots) and absorbs water and minerals directly over its whole surface, like an alga. With no lignified xylem, bryophytes stay short. Sperm swim from the antheridium through a film of water to the egg in the flask-shaped archegonium; the zygote grows into a small, unbranched sporophyte that stays attached to the gametophyte and depends on it for food. A spore germinates into a threadlike protonema (in mosses), which buds into leafy gametophytes. Mosses and liverworts are pioneer species on bare rock and soil.

Liverworts (Marchantiophyta)Mosses (Bryophyta)Hornworts (Anthocerotophyta)
GametophyteFlat lobed thallus or leafy (leaves in rows, no midrib)Leafy upright or creeping shoots, leaves spiral, often with a midribFlat thallus, rosettes or ribbons
RhizoidsOne-celledMany-celledOne-celled
StomataNone (thalloid types have air pores that cannot close)On the sporophyte capsuleOn the sporophyte
SporophyteTiny, short-lived capsule; spores mixed with spiral elatersFoot, seta (stalk) and capsule with lid (operculum), teeth (peristome), often covered by a cap (calyptra, torn from the archegonium, so gametophyte tissue)Long green horn that grows from a basal meristem for weeks, splitting from the tip to release spores
Special featuresGemma cups for asexual reproduction; umbrella-like gametophores in MarchantiaLargest group, roughly 12,000 species; Sphagnum (peat moss)Cyanobacteria (Nostoc) live in cavities of the thallus and fix nitrogen; often one large chloroplast per cell

Bryophytes lack lignified xylem, but many mosses have simple conducting cells in the center of the stem, hydroids (water) and leptoids (sugar); a few liverworts have comparable water-conducting cells, while hornworts have none. Mucilage is common: liverworts have mucilage cells and slime papillae, and hornworts have mucilage-filled cavities in the thallus that house their Nostoc colonies. Functions of the moss sporophyte parts are a classic short-answer item: the foot anchors the sporophyte in the gametophyte and absorbs water and nutrients from it; the seta lifts the capsule into moving air for better spore dispersal and conducts water and nutrients from the foot up to the developing capsule; the capsule (sporangium) makes spores by meiosis; the peristome teeth open and close with humidity to meter spores out. Many mosses separate or time their antheridia and archegonia to avoid self-fertilization, which would give offspring with no new genetic variation.

Seedless vascular plants: lycophytes, ferns and horsetails

Vascular tissue (xylem stiffened with lignin, plus phloem) lets these plants grow tall, and in them the sporophyte became the dominant, independent generation. They still need water for swimming sperm, and their gametophytes are small but free-living.

GroupMembersLeavesNotes
Lycophytes (Lycopodiophyta)Club mosses (Lycopodium), spike mosses (Selaginella), quillworts (Isoetes)Microphylls: small leaves with a single unbranched veinDespite the name, club mosses are not mosses; sporangia in cones (strobili); Selaginella is heterosporous; Carboniferous tree lycophytes (Lepidodendron) formed coal
Ferns (Polypodiopsida, in the monilophytes)Most ferns, tree ferns, water ferns (Azolla)Megaphylls (branched veins) called fronds; young fronds unroll from fiddleheadsStems usually underground rhizomes; sori on the underside of fronds
Horsetails (Equisetum)One living genusTiny scale leaves in whorls at nodesHollow, jointed, ribbed stems stiffened with silica ("scouring rushes"); spores with elaters in cone-like strobili
Whisk ferns (Psilotum)A few speciesTiny scalesForked stems, no roots; once thought to be living Rhynia-like fossils, now known to be reduced ferns

The fern life cycle. The fern plant with fronds is the diploid sporophyte. Sporangia, clustered into sori on the underside of fertile fronds (often covered by an indusium), make haploid spores by meiosis; the annulus flings them out. A spore grows into a small, heart-shaped, photosynthetic gametophyte, the prothallus, which bears antheridia and archegonia on its underside and is independent of the sporophyte. Fern gametophytes often make antheridia before archegonia (protandry), which favors outcrossing. Sperm swim to the egg; the zygote grows into a new sporophyte that soon outgrows and replaces the prothallus. Some ferns show frond dimorphism, with separate fertile (spore-bearing) and sterile (photosynthetic) fronds, as in sensitive fern and cinnamon fern. The water fern Azolla houses nitrogen-fixing cyanobacteria (Anabaena) and has long been used as a green manure in rice paddies.

Gymnosperms

Gymnosperms ("naked seeds") bear seeds exposed on the surface of cone scales or similar structures, not enclosed in an ovary, so they make no flowers and no fruits. They are heterosporous seed plants with a dominant sporophyte, a seed coat around each seed, and pollen (the immature male gametophyte) that wind carries to the ovule, so no water is needed for fertilization (cycads and ginkgo still release swimming sperm inside the ovule). Their xylem is almost all tracheids; most lack vessels. Their wood is called softwood, whereas angiosperm trees give hardwood (with vessels and fibers), though some "softwoods" are harder than some "hardwoods".

PhylumMembersRecognize it by
Coniferophyta (conifers)Pines, spruces, firs, hemlocks, redwoods, cypresses, junipers, yewsNeedle or scale leaves, mostly evergreen (larch, bald cypress and dawn redwood are deciduous); woody cones (yews and junipers have fleshy, berry-like seed structures); resin
Cycadophyta (cycads)Sago palm (Cycas), ZamiaPalm-like crown of stiff compound leaves on a stout trunk; large cones; dioecious; coralloid roots hold nitrogen-fixing cyanobacteria; swimming sperm
GinkgophytaGinkgo biloba onlyThe single living species of its phylum (order Ginkgoales); fan-shaped leaves with forked veins; deciduous; dioecious; female trees drop foul-smelling fleshy seeds; swimming sperm
GnetophytaEphedra, Gnetum, WelwitschiaHave vessels in their xylem and a form of double fertilization; Ephedra is the source of ephedrine; Welwitschia of the Namib Desert grows only two strap-like leaves for its whole life, which can span centuries

The pine life cycle. The tree is the sporophyte. Small pollen cones (microsporangiate) grow in clusters, typically on the lower branches, and make enormous amounts of winged pollen grains (immature male gametophytes) by meiosis and mitosis. Larger seed cones (ovulate), typically on the upper branches, carry two ovules on each scale. At pollination, a sticky pollination drop oozing from the micropyle catches pollen and draws it into the ovule. Fertilization comes about 15 months later, after the pollen tube has slowly grown through the megasporangium; the seeds then mature (usually in the autumn of the second year) and are shed from the opened cone. Each seed holds a diploid embryo, a haploid food supply (the female gametophyte tissue, not endosperm) and a seed coat. Gymnosperms dominated from the Permian through the Jurassic; conifers first appeared in the Late Carboniferous, related to the extinct Cordaites.

Angiosperms

Angiosperms (phylum Anthophyta, also Magnoliophyta) are the flowering plants, with roughly 350,000 described species (estimates run from about 300,000 to 370,000), close to 90% of all land plant species. What sets them apart:

  • Flowers, which recruit animal pollinators (co-evolution with insects, birds and bats) and speed up pollination.
  • Ovules enclosed in a carpel, so the seeds develop inside an ovary that ripens into a fruit, which protects seeds and aids their dispersal.
  • Double fertilization, which makes a triploid endosperm only after fertilization succeeds, so the plant does not waste food on unfertilized ovules.
  • Highly reduced gametophytes: the male gametophyte is the pollen grain (a tube cell plus a generative cell that divides into two sperm), and the female gametophyte is the embryo sac (typically seven cells with eight nuclei).
  • Vessel elements in the xylem and companion cells in the phloem.
  • A short generation time in many species, allowing herbaceous annual life cycles.

Modern classification (APG) splits angiosperms into a few early branches, the ANA grade (Amborella, water lilies, star anise), and the mesangiosperms: magnoliids (magnolias, laurels, avocado, black pepper), Chloranthales, monocots, Ceratophyllum (coontail) and eudicots. Angiosperms appear in the fossil record in the Early Cretaceous, about 130 million years ago, and dominated most land ecosystems by the end of the Cretaceous.

Plant and algal groups at a glance

Algae and plants are told apart on tests by the same few traits: which pigments they have, how many membranes wrap the chloroplast (two for primary plastids, three or four for secondary ones), what food they store and what the wall is made of, and their body plan and life cycle. This table covers every lineage tests ask about, from cyanobacteria and minor algal groups to extinct seed plants, so you can compare any two rows directly; "primary" plastids came from an engulfed cyanobacterium and "secondary" plastids from an engulfed red or green alga. All land plants share chlorophylls a and b, two-membrane chloroplasts, starch and cellulose walls, so their rows focus on body and life cycle.

ReferencePlant and algal groups· 52 rows

Chl = chlorophyll. Membranes = number of membranes around the plastid. Gametophyte = haploid (n); sporophyte = diploid (2n). † = extinct.

52 rows
GroupRank or cladePigments / chloroplast membranesStorage product and wallBody and life cycleExamples and notes
Cyanobacteria ("blue-green algae")Domain Bacteria; phylum CyanobacteriaChl a, phycobilins (phycocyanin, phycoerythrin) in phycobilisomes; no chloroplast (thylakoids free in cytoplasm)Cyanophycean (glycogen-like) starch; peptidoglycan wall, often a mucilage sheathUnicells, colonies, filaments; heterocysts fix N₂, akinetes survive stress; asexual onlyNostoc, Anabaena, Oscillatoria, Spirulina, Microcystis (toxic blooms); stromatolites; made Earth's oxygen; ancestors of all plastids
GlaucophytesPhylum Glaucophyta; ArchaeplastidaChl a, phycobilins; 2 membranes with a peptidoglycan layer between them (cyanelle or muroplast)Starch in cytoplasmSmall freshwater unicells; no sex knownCyanophora, Glaucocystis; plastid most like a free cyanobacterium
Red algaePhylum Rhodophyta; ArchaeplastidaChl a, phycoerythrin, phycocyanin; 2 membranes; unstacked thylakoidsFloridean starch in cytoplasm; cellulose with agar and carrageenan; coralline algae add CaCO₃Mostly marine seaweeds; no flagella or centrioles at any stage; often a three-phase life cycle (gametophyte, carposporophyte, tetrasporophyte)Nori (Pyropia, Porphyra), Gelidium, Gracilaria, Irish moss (Chondrus), Corallina; grow deepest of seaweeds
ChlorophyceaeClass in phylum Chlorophyta (green algae)Chl a and b, carotenoids; 2 membranesStarch inside chloroplast, often around pyrenoids; cellulose or glycoprotein wallFlagellated unicells, colonies, filaments; mostly haplontic (zygotic meiosis)Chlamydomonas (isogamy, eyespot), Volvox (oogamy), Oedogonium; mostly freshwater
UlvophyceaeClass in ChlorophytaChl a and b; 2 membranesStarch; cellulose or other polysaccharide wallsSheets, filaments, giant single or coenocytic cells; Ulva alternates isomorphic generationsSea lettuce (Ulva), Acetabularia (one giant cell; Hämmerling's nucleus experiments), Caulerpa (invasive "killer alga"), Codium, Cladophora
TrebouxiophyceaeClass in ChlorophytaChl a and b; 2 membranesStarch; celluloseMostly non-flagellate unicells; asexual autosporesChlorella (studied by Calvin), Trebouxia (the commonest lichen partner)
PrasinophytesEarly-diverging Chlorophyta (a grade)Chl a and b; 2 membranesStarch; organic body scales or noneTiny scaly flagellates and picoplanktonOstreococcus (smallest known free-living eukaryote), Micromonas
Early charophytesStreptophyta (with land plants): Mesostigmatophyceae, Chlorokybophyceae, KlebsormidiophyceaeChl a and b; 2 membranesStarch; celluloseUnicells, packets, unbranched filamentsMesostigma, Klebsormidium (filaments on soil and bark)
Stoneworts (Charales)Class Charophyceae, StreptophytaChl a and b; 2 membranesStarch; cellulose, often crusted with CaCO₃ in CharaLarge whorled nodes and giant multinucleate internode cells; oogonium wrapped in spiral cells; haplontic; phragmoplastChara, Nitella; cytoplasmic streaming studies; once considered closest to land plants
ColeochaetalesClass Coleochaetophyceae, StreptophytaChl a and b; 2 membranesStarch; celluloseDisk-shaped, parenchyma-like or branched; sheathed hairs; zygote retained on parent and covered by cells; oogamous; phragmoplastColeochaete; hints of the retained, nourished zygote of land plants
Conjugating algae (Zygnematales and desmids)Class Zygnematophyceae, StreptophytaChl a and b; 2 membranes; ribbon (Spirogyra) or star (Zygnema) chloroplastsStarch; celluloseNo flagellated cells; sex by conjugation (scalariform or lateral); haplonticSpirogyra, Zygnema, desmids (Closterium, Micrasterias); now judged the sister group of land plants
EuglenoidsEuglenozoa (Discoba); secondary green plastidChl a and b; 3 membranesParamylon (β-1,3-glucan) in cytoplasm; no wall, a protein pellicleFlagellated unicells with eyespot; longitudinal fission; no sex known; many mixotrophsEuglena; relatives of trypanosomes
ChlorarachniophytesRhizaria (Cercozoa); secondary green plastidChl a and b; 4 membranes with a nucleomorph (relic algal nucleus)Polysaccharide (β-1,3-glucan type) outside plastidMarine amoebae with net-like pseudopods; some flagellate stagesChlorarachnion, Bigelowiella
Cryptomonads (cryptophytes)Cryptista; secondary red plastidChl a and c₂, phycobilins inside thylakoid lumen, alloxanthin; 4 membranes with a nucleomorphStarch between the 2nd and 3rd membranes; protein periplastTwo-flagellate unicells with ejectisomesCryptomonas, Guillardia; a prime zooplankton food
Haptophytes and coccolithophoresHaptophyta; secondary red plastidChl a, c, fucoxanthin; 4 membranes, no nucleomorphChrysolaminarin; scales, calcite coccoliths in coccolithophoresUnicells with two flagella plus a haptonemaEmiliania huxleyi (blooms seen from space); ancient coccolithophores made chalk such as the White Cliffs of Dover, Phaeocystis, toxic Prymnesium
DinoflagellatesAlveolata; plastids mostly secondary red (some replaced)Chl a and c₂, peridinin; usually 3 membranes; about half have no plastidStarch in cytoplasm; cellulose plates (thecae) inside alveoli, or nakedTwo flagella, one in a girdle groove and one trailing; dinokaryon (always-condensed chromosomes); haplontic; resting cystsKarenia brevis (Florida red tide), Alexandrium (paralytic shellfish poisoning), bioluminescent Noctiluca, coral zooxanthellae (Symbiodinium; bleaching)
DiatomsBacillariophyceae, stramenopiles (Ochrophyta); secondary red plastidChl a and c, fucoxanthin; 4 membranes (outer one joined to nuclear envelope)Chrysolaminarin and oils; silica frustule of two overlapping halvesCentric (radial) and pennate (bilateral; raphe lets them glide); diplontic; cells shrink each division until an auxospore restores sizeAbout 20% of Earth's photosynthesis; diatomaceous earth; domoic acid from Pseudo-nitzschia; used in forensics (drowning)
Brown algaePhaeophyceae, stramenopilesChl a and c, fucoxanthin; 4 membranesLaminarin and mannitol; cellulose plus alginates and fucoidanMulticellular, almost all marine; holdfast, stipe, blades, air bladders; kelps: big sporophyte, microscopic gametophyte; Fucus diplontic; sperm with two side flagellaGiant kelp (Macrocystis), Laminaria, bull kelp, rockweed (Fucus), Sargassum; alginate thickens ice cream; kelp "trumpet hyphae" conduct sugars
Golden algaeChrysophyceae, stramenopilesChl a and c, fucoxanthin; 4 membranesChrysolaminarin and oils; naked, silica scales or a loricaMostly freshwater flagellates and colonies; silica-walled resting cysts; many mixotrophsDinobryon, Synura, Mallomonas
Yellow-green algaeXanthophyceae, stramenopilesChl a and c; little or no fucoxanthin, so yellow-green; 4 membranesOil droplets (chrysolaminarin reported); cellulose walls, often in two overlapping halvesFilaments and coenocytes; unequal flagella on zoosporesVaucheria (coenocytic "water felt", oogamous), Tribonema, Botrydium
Oomycetes (for contrast)Stramenopiles, not true fungiNo plastid; heterotrophsCellulose (and β-glucan) walls, not chitinDiploid coenocytic filaments; swimming zoospores; oosporesPhytophthora infestans (potato late blight), Pythium (damping-off), downy mildews
LiverwortsPhylum Marchantiophyta; bryophytesChl a and b; 2 membranes (all land plants)Starch; cellulose; unique oil bodiesGametophyte dominant: thallus or leafy; one-celled rhizoids; no stomata; short-lived capsule with elaters; gemma cupsMarchantia, Riccia; once often placed as the earliest-diverging land plants; now usually grouped with mosses within monophyletic bryophytes
MossesPhylum BryophytaSame as all land plantsStarch; celluloseLeafy gametophyte, multicellular rhizoids, protonema; sporophyte with foot, seta, capsule, peristome, calyptra; stomata on capsuleAbout 12,000 species; Sphagnum (peat; dead hyaline cells hold water; acidifies bogs), Polytrichum (hydroids and leptoids)
HornwortsPhylum AnthocerotophytaOften one large chloroplast per cell with a pyrenoid (unique in land plants)Starch; celluloseThalloid gametophyte; horn-shaped sporophyte grows from a basal meristem; stomata; Nostoc in mucilage cavitiesAnthoceros; may be sister to mosses plus liverworts
Rhyniophytes †Early polysporangiophytes (Silurian to Devonian)Presumed as land plantsLignified or simple conducting cellsLeafless, rootless, forking stems with terminal sporangia; homosporousCooksonia (Silurian, about 430 Ma; among the first vascular plants), Rhynia, Aglaophyton (Rhynie chert, Scotland, about 407 Ma)
Zosterophylls †Lycophyte relatives (Devonian)Presumed as land plantsTracheidsLeafless stems; kidney-shaped sporangia on the sides of stemsZosterophyllum; Asteroxylon of the Rhynie chert is an early lycophyte with leaf-like enations
Club mossesLycopodiaceae, phylum LycopodiophytaSame as all land plantsStarch; cellulose, ligninMicrophylls; dichotomous branching; sporangia on sporophylls, often in strobili; homosporous; long-lived subterranean gametophytes with fungiLycopodium, Huperzia, ground pine (Diphasiastrum); flammable spores were flash powder
Spike mosses and quillwortsSelaginellaceae and Isoetaceae, LycopodiophytaSameStarch; cellulose, ligninHeterosporous (micro- and megaspores); a small ligule on each leafResurrection plant (Selaginella lepidophylla); Isoetes (aquatic; some do CAM; secondary growth)
Tree lycopsids †Lepidodendrales, Lycopodiophyta (Carboniferous)Presumed as land plantsLignified, thick barkTrees to about 40 m; diamond leaf scars; Stigmaria rooting systems; heterosporous, some seed-likeLepidodendron, Sigillaria; major coal formers of the coal swamps
Trimerophytes †Euphyllophyte grade (Devonian)Presumed as land plantsTracheidsMain axis with side branches (overtopping), terminal sporangia; homosporousPsilophyton; thought to be near the ancestry of ferns and seed plants
Leptosporangiate fernsPolypodiidae, monilophytesSame as all land plantsStarch; cellulose, ligninMegaphyll fronds, fiddleheads, rhizomes; sori, indusium; sporangium from one cell with an annulus; homosporous; free-living prothallusOver 90% of fern species (about 11,000); bracken, Boston fern, tree ferns
Water fernsSalviniales (leptosporangiate)SameStarch; celluloseHeterosporous; spores in sporocarpsAzolla (hosts N-fixing Anabaena; rice green manure), Salvinia (invasive), Marsilea (four-leaf "clover")
Whisk ferns and adder's tonguesPsilotales and Ophioglossales (eusporangiate ferns)SameStarch; cellulose, ligninThick-walled eusporangia; subterranean, fungus-fed gametophytes; Psilotum has no roots or true leaves, forked stems and three-lobed synangiaPsilotum, Tmesipteris; adder's tongue (Ophioglossum, very high chromosome number), moonworts (Botrychium)
Marattioid fernsMarattiales (eusporangiate)SameStarch; cellulose, ligninHuge fronds with fleshy stipules; large sporangia in sori, fused into synangia in Marattia and Danaea but free in AngiopterisAngiopteris, Marattia; tropical; an ancient lineage
HorsetailsEquisetales (Equisetidae), monilophytesSameStarch; cellulose with silicaJointed, hollow, ribbed stems; whorls of small fused scale leaves; strobili; spores with elaters; homosporousOne living genus, Equisetum ("scouring rush"); extinct tree-sized Calamites † of coal swamps
Progymnosperms †Late DevonianPresumed as land plantsSecondary xylem like conifer woodWoody trees reproducing by spores (some heterosporous), no seedsArchaeopteris, the first forest-forming trees; link between ferns and seed plants
Seed ferns † ("pteridosperms")Paraphyletic early seed plants (Late Devonian to Mesozoic)Presumed as land plantsWoodFern-like fronds that bore seeds; the first seed plantsElkinsia (earliest seeds, about 365 Ma), Medullosa, Lyginopteris; Glossopteris (Permian Gondwana; evidence for continental drift)
Cordaitales †Coniferophyte relatives (Carboniferous to Permian)Presumed as land plantsWoodTall trees with long strap-like, parallel-veined leaves; loose conesCordaites; related to the ancestors of conifers
Bennettitales † (cycadeoids)Mesozoic seed plants (Triassic to Cretaceous)Presumed as land plantsWoodCycad-like leaves and trunks; many had bisexual, flower-like conesCycadeoidea, Williamsonia; once proposed as close angiosperm relatives
CycadsPhylum CycadophytaSame as all land plantsStarch; cellulose, ligninPalm-like, slow-growing; dioecious; large cones; coralloid roots with cyanobacteria; flagellated sperm; archegoniaCycas revoluta (sago palm; toxic to pets), Zamia (coontie, Florida's native cycad); toxins cycasin and BMAA
GinkgoPhylum GinkgophytaSameStarch; cellulose, ligninDeciduous tree; fan leaves with forking veins; short shoots; dioecious; flagellated sperm (Hirase, 1896); fleshy seeds smell of butyric acidGinkgo biloba only; "living fossil"; plant male trees on streets; survived Hiroshima
Pine familyPinaceae, phylum ConiferophytaSameStarch; cellulose, lignin; resin ductsNeedles (pines in bundles called fascicles); woody seed cones with two ovules per scale; pollen usually with air sacs (absent in larch and Douglas-fir); about 15 months from pollination to fertilization in pinesPines, spruces, firs, hemlocks, Douglas-fir, larches (deciduous); bristlecone pine (oldest non-clonal trees, over 4,800 years)
Cypress family and other conifersCupressaceae, Taxaceae, Podocarpaceae, AraucariaceaeSameStarch; cellulose, ligninScale or needle leaves; small woody or berry-like cones; yews have a single seed in a red arilCoast redwood (tallest tree), giant sequoia (most massive), dawn redwood and bald cypress (deciduous), junipers (gin berries); Pacific yew (taxol), monkey puzzle, Wollemi pine
GnetophytesPhylum GnetophytaSameStarch; cellulose, ligninVessels in xylem; compound strobili; a form of double fertilization (Ephedra, Gnetum) without true endosperm; Gnetum and Welwitschia lack archegoniaEphedra (ephedrine; Mormon tea), Gnetum (broad-leaved tropical vines and trees), Welwitschia (two leaves for life; Namib Desert)
ANA gradeAmborellales, Nymphaeales, Austrobaileyales; earliest angiosperm branchesSameStarch; cellulose, ligninSmall flowers with spiral, often many parts; Amborella lacks vessels (tracheids only)Amborella trichopoda (New Caledonia; sister to all other flowering plants), water lilies (Nymphaea, giant Victoria), star anise (Illicium)
MagnoliidsClade of Magnoliales, Laurales, Piperales, CanellalesSameStarch; cellulose, lignin; aromatic oil cellsSingle-aperture (monosulcate) pollen; often many free, spirally arranged flower parts and undifferentiated tepalsMagnolia, tulip tree, pawpaw, nutmeg; avocado, cinnamon, bay laurel, sassafras; black pepper; about 10,000 species
Ceratophyllum and ChloranthalesSmall early mesangiosperm lineagesSameStarch; celluloseCoontail is submerged and rootless with tiny unisexual flowers; Chloranthaceae have tiny reduced flowersHornwort or coontail (Ceratophyllum; not the bryophyte hornworts), Chloranthus
MonocotsClade Monocotyledons (Liliopsida)SameStarch; cellulose; commelinids (grasses, palms) add UV-fluorescent ferulic acid to wallsOne cotyledon; parallel veins; parts in threes; scattered vascular bundles; fibrous adventitious roots; no true secondary growth; monosulcate pollenAbout a quarter of angiosperms; grasses, orchids, lilies, palms, sedges, bromeliads, gingers, aroids, duckweeds; sweet flag (Acorus) branches first
Early-diverging eudicotsRanunculales, Proteales and othersSameStarch; cellulose, ligninTricolpate pollen (three apertures) marks all eudicots; often many free floral partsButtercups, columbine, poppies, barberry; sacred lotus (Nelumbo), sycamores and plane trees, Protea
CaryophyllalesOrder in core eudicotsSameStarch; cellulose; most use betalain pigments instead of anthocyaninsMany succulents, halophytes and carnivores; unusual anomalous secondary growth in someCacti, carnations, spinach, beets, amaranth, four-o'clocks; sundews (Drosera), Venus flytrap, pitcher plants (Nepenthes)
RosidsLarge clade of core eudicotsSameStarch; cellulose, ligninMostly free petals; some with nitrogen-fixing root nodules, all within one "nitrogen-fixing clade" (legumes, Alnus)Legumes, roses, mustards, maples, oaks, citrus, cucurbits, grapes, Arabidopsis
AsteridsLarge clade of core eudicotsSameStarch; cellulose, ligninMostly fused petals (sympetalous), often one ovule wall layer; iridoid compounds commonSunflowers and daisies, tomatoes and potatoes, mints, coffee, carrots, olives, blueberries, morning glories

Woody vs. herbaceous and life spans

Woody plants make wood (secondary xylem) from a vascular cambium and keep their stems above ground from year to year: trees (one main trunk), shrubs (several stems from the base) and woody vines (lianas). Herbaceous plants have soft, green, non-woody stems that die back to the ground at the end of the season, though herbaceous perennials survive underground. Vines climb or trail on supports by twining, tendrils or roots; they may be woody (grape, wisteria) or herbaceous (morning glory). Ecologists divide herbaceous plants into graminoids (grass-like plants: grasses, sedges and rushes) and forbs (broad-leaved, non-grass-like herbs such as wildflowers). Growth habit words: upright, climbing, creeping (growing horizontally along the ground), rosette.

Life spanDefinitionExamples
AnnualGerminates, flowers, sets seed and dies in one growing seasonTomato, marigold, corn, beans, sunflower, zinnia
BiennialTwo seasons: a leafy rosette (storing food) the first year, flowers and seed the second, then diesCarrot, parsley, foxglove, hollyhock, beet, cabbage, onion (when grown for seed)
PerennialLives three or more years, usually flowering repeatedlyTrees, shrubs, hostas, peonies, asparagus, rhubarb

Deciduous plants drop all their leaves for an unfavorable season (winter or a dry season) and regrow them; evergreen plants keep leaves year-round, replacing them gradually. Many deciduous trees are angiosperms and many evergreens are conifers, but there are exceptions both ways (evergreen hollies and live oaks; deciduous larches).

Record holders tests like: the oldest known individual tree is a Great Basin bristlecone pine (Pinus longaeva, "Methuselah", over 4,800 years old); the largest tree by volume is the giant sequoia General Sherman; the tallest is a coast redwood (about 116 m); the most massive clonal organism is Pando, a grove of genetically identical quaking aspen in Utah joined by one root system; the smallest flowering plant is watermeal (Wolffia), a rootless floating duckweed relative (duckweed, Lemna, is a different genus that does have roots); the largest single flower is Rafflesia arnoldii.

Naming and classification

Binomial nomenclature, popularized by Carl Linnaeus (Species Plantarum, 1753, the official starting point for plant names), gives every species a two-part Latin name: the genus (capitalized) and the specific epithet (lowercase), both italicized, as in Zea mays (corn) or Helianthus annuus (common sunflower). A name may be followed by the author who published it ("L." for Linnaeus). Names are governed by the International Code of Nomenclature for algae, fungi, and plants; each name is tied to a type specimen in a herbarium. Hybrids carry a multiplication sign (Mentha × piperita, peppermint); cultivars carry a name in single quotes (Malus domestica 'Gala'); orchid hybrid groups are registered as a grex.

Plant taxonomy has three core tasks: identification (deciding what a specimen is), nomenclature (giving it the correct name) and classification (placing it in a hierarchy of related groups), resting on careful description. The hierarchy, most to least inclusive: kingdom, phylum (botanists say division), class, order, family, genus, species. Ranks above genus have standard endings in plants: division -phyta, class -opsida, order -ales, family -aceae. Eight families also keep older, conserved names: Gramineae (Poaceae), Leguminosae (Fabaceae), Compositae (Asteraceae), Cruciferae (Brassicaceae), Umbelliferae (Apiaceae), Labiatae (Lamiaceae), Palmae (Arecaceae) and Guttiferae (Clusiaceae).

Classification systems moved from artificial to natural to phylogenetic. Theophrastus grouped plants by growth form (trees, shrubs, subshrubs, herbs). Linnaeus's sexual system was artificial: it sorted flowering plants by the number and arrangement of stamens and pistils. Natural systems (de Jussieu, de Candolle, Bentham and Hooker) grouped plants by overall similarity; evolutionary systems followed (Engler and Prantl, Cronquist, Takhtajan). Today's Angiosperm Phylogeny Group system (APG IV, 2016) is built from DNA sequences and recognizes 64 orders and 416 families. Cladistic terms: a clade or monophyletic group contains an ancestor and all its descendants; a paraphyletic group contains an ancestor and only some descendants ("dicots" and the green algae are examples; older texts also call bryophytes paraphyletic, though recent DNA studies mostly find them monophyletic); a polyphyletic group gathers organisms from different ancestors ("algae" as a whole); a synapomorphy is a shared derived trait that defines a clade (double fertilization for angiosperms). Phylogenetic trees are built from shared heritable characters: DNA and protein sequences and morphological (and fossil) traits, analyzed for synapomorphies; geographic location or overall similarity alone does not establish relationships. A dichotomous key identifies a specimen by a series of paired, mutually exclusive choices.

Plant families to know

Identification questions name a family, a genus or a common plant and ask you to match them. The families below cover most of what tests ask; learn the field marks in the third column.

ReferenceCommon plant families· 28 rows

M = monocot. Placentation and fruit types are explained under Flowers and Fruits and seeds.

28 rows
Family (older name)MembersField marks
Poaceae (Gramineae), grasses, MWheat, rice, corn, oats, barley, bamboo, sugarcane, lawn grassesHollow round stems with solid nodes; leaf sheath and ligule; tiny wind-pollinated flowers in spikelets; fruit a caryopsis (grain); embryo with a scutellum
Fabaceae (Leguminosae), legumesPeas, beans, soybean, peanut, clover, alfalfa, lupines (Texas bluebonnet), mesquite, redbud, wisteria, black locustOften compound leaves; in most, "butterfly" (papilionaceous) flowers with banner, wings and keel; fruit a legume (pod); root nodules with nitrogen-fixing rhizobia in most; marginal placentation
Rosaceae, rose familyRose, apple, pear, cherry, peach, plum, almond, strawberry, raspberry, hawthornFive petals and many stamens; hypanthium (floral cup); stipules; fruits include pomes, drupes, aggregates and accessory fruits
Asteraceae (Compositae), daisy familySunflower, daisy, dandelion, lettuce, marigold, zinnia, chrysanthemum, ragweed, artichokeA head (capitulum) of many tiny florets (ray and disk) that looks like one flower; fruit a cypsela (achene-like), often with a pappus for wind; basal placentation; the largest or second-largest flowering-plant family
Solanaceae, nightshade familyTomato, potato, eggplant, peppers, tobacco, petunia, deadly nightshade, ground cherry, buffalo burFive fused petals; often toxic alkaloids (solanine, nicotine, atropine); fruit a berry or capsule; ovary of two carpels set obliquely; axile placentation
Brassicaceae (Cruciferae), mustard familyCabbage, broccoli, cauliflower, kale, Brussels sprouts, kohlrabi (all Brassica oleracea), mustard, radish, turnip, ArabidopsisFour petals in a cross; six stamens (four long, two short); fruit a silique (or a short silicle); pungent glucosinolates; parietal placentation
Apiaceae (Umbelliferae), carrot familyCarrot, celery, parsley, parsnip, dill, fennel, coriander, poison hemlockFlowers in umbels; often hollow stems; aromatic; fruit a schizocarp that splits in two
Lamiaceae (Labiatae), mint familyMint, basil, sage (Salvia), rosemary, lavender, thyme, oreganoSquare stems, opposite leaves, aromatic oils, two-lipped flowers
Cucurbitaceae, gourd familySquash, pumpkin, cucumber, melons, watermelon, gourds, luffa (loofah)Climbing vines with tendrils; separate male and female flowers (usually monoecious); fruit a pepo
Liliaceae (narrow sense), lily family, MLilies, tulips, trout lilyShowy flowers with six tepals in threes; bulbs; superior ovary. Onions and garlic are now in Amaryllidaceae, asparagus and hostas in Asparagaceae
Amaryllidaceae, MOnion, garlic, leek, chives, daffodil, amaryllisBulbs; flowers often in umbels; onion smell in Allium
Orchidaceae, orchids, MOrchids, vanillaThe largest or second-largest family; zygomorphic flowers with a lip (labellum) and a column of fused stamens and pistil; pollen in packets (pollinia); dust-like seeds that need mycorrhizal fungi to germinate; many epiphytes
Arecaceae (Palmae), palms, MCoconut, date palm, oil palmWoody monocots with no vascular cambium; large fan or feather leaves
Bromeliaceae, MPineapple, Spanish moss, many epiphytesLeaf rosettes that hold water ("tanks"); CAM in many
Cactaceae, cactiCacti, prickly pearSpines (modified leaves) grow from areoles, the feature that marks a cactus; succulent stems; CAM; almost all native to the Americas
Fagaceae, beech familyOaks (Quercus), beeches (Fagus), chestnutsNuts in a cup or spiny husk (acorns); catkins
Betulaceae, birch familyBirches (Betula), alders, hazelnutsCatkins; alders fix nitrogen with Frankia bacteria
JuglandaceaeWalnuts (Juglans), pecans, hickoriesPinnately compound leaves; nuts in a husk; black walnut's juglone
SapindaceaeMaples (Acer), buckeyes, lycheeMaples and buckeyes have opposite leaves; maples have paired samaras
SalicaceaeWillows (Salix), poplars, aspens, cottonwoods (Populus)Dioecious; catkins; salicin in the bark
Rutaceae, citrus familyOrange, lemon, lime, grapefruitAromatic oil glands dotting the leaves; fruit a hesperidium
Moraceae, mulberry familyFig, mulberry, breadfruit, rubber plant (Ficus elastica)Milky latex; multiple fruits (the fig is a syconium)
Malvaceae, mallow familyCotton, hibiscus, okra, cacao, durianStamens often fused into a tube around the style (hibiscus, cotton)
Euphorbiaceae, spurge familyPoinsettia, cassava, castor bean, rubber tree (Hevea)Often milky, toxic latex; small unisexual flowers (in Euphorbia, such as poinsettia, grouped in a cup-like cyathium)
Ericaceae, heath familyBlueberry, cranberry, azalea, rhododendronAcid-soil plants with special (ericoid) mycorrhizae
Anacardiaceae, cashew familyCashew, mango, pistachio, poison ivy, sumacResinous sap that can irritate skin (urushiol); often dioecious or with mixed flower types
Pinaceae (gymnosperm)Pines (Pinus), spruces, firs, larchesNeedles (pines in bundles called fascicles); woody seed cones
Others in plant-ID listsCarnation and pinks (Dianthus, Caryophyllaceae), poppy (Papaver, Papaveraceae), evening primrose (Oenothera, Onagraceae), passionflower (Passifloraceae), violets and pansies (Violaceae), verbenas (Verbenaceae), honeysuckles (Lonicera, Caprifoliaceae), snapdragon (Plantaginaceae), sweet potato and morning glory (Convolvulaceae), eucalyptus (Myrtaceae), buttercups (Ranunculaceae)

The spiderwort family (Commelinaceae) is another frequent ID group: spiderworts (Tradescantia, including the houseplant often sold as wandering Jew, T. zebrina) and dayflowers (Commelina, such as whitemouth or erect dayflower, C. erecta), whose flowers open for a single morning with two showy blue petals and one small one. Regional identification lists, especially at Texas tournaments, pair scientific and common names of native wildflowers. Examples with their families: Texas bluebonnet (Lupinus texensis, Fabaceae; the state flower), Indian paintbrush (Castilleja, Orobanchaceae), Indian blanket (Gaillardia pulchella, Asteraceae), Mexican hat (Ratibida columnifera, Asteraceae), black-eyed Susan (Rudbeckia hirta, Asteraceae), clasping coneflower (Dracopis amplexicaulis, Asteraceae), purple coneflower (Echinacea, Asteraceae), thistles (Cirsium, Asteraceae), desert marigold (Baileya multiradiata, Asteraceae), eryngo or button snakeroot (Eryngium, Apiaceae), Texas bluebell (Eustoma, Gentianaceae) and rose gentians (Sabatia, Gentianaceae), pink evening primrose (Oenothera speciosa, Onagraceae), winecup (Callirhoe, Malvaceae), mealy sage (Salvia farinacea, Lamiaceae), horsemint (Monarda citriodora, Lamiaceae), coral bean (Erythrina herbacea, Fabaceae), honey mesquite (Prosopis glandulosa, Fabaceae), evening rain lily, also called autumn zephyr lily (Cooperia drummondii, now Zephyranthes drummondii, Amaryllidaceae), coral honeysuckle (Lonicera sempervirens, Caprifoliaceae), milkweeds (Asclepias, Apocynaceae), prickly pear (Opuntia, Cactaceae), yuccas and agaves (Asparagaceae), wild pansy and violets (Viola, Violaceae), buffalo bur (Solanum rostratum, Solanaceae; doves and quail eat its seeds) and lantana (Lantana, Verbenaceae). Many of these wildflowers have become garden and florist plants: Texas bluebell (Eustoma) is the cut-flower lisianthus, and purple coneflower, black-eyed Susan, gaillardia, yarrow, salvias and milkweeds are staples of pollinator gardens and xeriscapes. Endangered Texas plants include Texas wild rice (Zizania texana) and the star cactus (Astrophytum asterias), both federally listed.

Genus names tests often expect: Pelargonium (the garden geranium; true Geranium is cranesbill), Acer (maple; a stylized maple leaf is on Canada's flag), Quercus (oak), Juglans (walnut), Pinus (pine), Betula (birch), Fagus (beech), Salix (willow), Populus (poplar, aspen), Dianthus (carnation), Helianthus (sunflower), Papaver (poppy), Taraxacum (dandelion), Malus (apple), Prunus (cherry, plum, peach, almond), Rosa (rose), Solanum (tomato, potato, eggplant), Phaseolus vulgaris (common and green bean), Pisum sativum (garden pea), Triticum (wheat), Oryza sativa (rice), Gossypium (cotton), Coffea (coffee), Camellia sinensis (tea), Theobroma cacao (chocolate), Nicotiana (tobacco), Vitis (grape).

Monocots vs. dicots

FeatureMonocotsDicots (mostly eudicots)
CotyledonsOneTwo
Leaf veinsParallelNetted (reticulate)
Stem vascular bundlesScatteredIn a ring
Flower partsUsually in threesUsually in fours or fives
RootsFibrous; the embryonic root dies early and the root system is adventitious (from the stem base)Taproot common, grown from the radicle
Root cross-sectionRing of xylem and phloem around a central pithXylem in a central star or X, no pith
Leaf shape and stomataOften long and narrow with a sheathing base; stomata often on both surfacesBroad, with a petiole; stomata mostly on the lower surface
PollenOne pore or furrowThree pores or furrows (eudicots)
Secondary growthRare; tree-like monocots (palms, bamboos, agaves, yuccas) thicken without a true vascular cambiumCommon (woody dicots)
ExamplesGrasses and grains (corn, wheat, rice), lilies, onions and garlic, orchids, palms, bananas, irises, seagrassesRoses, beans, oaks, maples, apples, grapes, sunflowers, tomatoes, snapdragons

The traditional "dicots" are not one natural group: most are eudicots (a monophyletic group with three-pored pollen), and a few early-branching lineages (magnolias, water lilies, laurels, black pepper) sit outside both. So monocots and eudicots are each monophyletic, while "dicots" in the old sense are paraphyletic. Monocots are not eudicots. Tests usually use "dicot" in the traditional sense. Among crops, the monocots are the grasses and grains (corn, wheat, rice, oats, barley, sugarcane), onions, garlic and leeks, asparagus, bananas, pineapple, ginger, yams and coconut and date palms; nearly every other vegetable and fruit is a eudicot, including spinach and beets (Amaranthaceae), lettuce, beans, tomatoes, potatoes, carrots and apples. A useful field rule: count the petals (threes for monocots, fours or fives for dicots) and look at the veins. Grass-like monocots are told apart with the rhyme "sedges have edges, rushes are round, grasses have joints": sedges (Cyperaceae, such as papyrus and nutsedge) have solid, usually triangular stems with leaves in three ranks; rushes (Juncaceae) have round, often pith-filled stems; grasses (Poaceae) have round, usually hollow stems with solid, swollen nodes and leaves in two ranks.

Photosynthesis and respiration

Photosynthesis converts light energy into chemical energy. Chemically it is a redox process: water is oxidized (it loses electrons and releases O₂) and CO₂ is reduced to carbohydrate (it gains electrons, carried by NADPH). Almost all the carbon in a plant comes from the air through the stomata, not from the soil. Photosynthesis by plants, algae and cyanobacteria is also the source of essentially all the O₂ in the atmosphere.

The chloroplast

Photosynthesis in plants happens in chloroplasts, mostly in the palisade mesophyll of leaves (a single leaf cell may hold dozens). A chloroplast has a double-membrane envelope around a fluid stroma, in which sits a third membrane system, the thylakoids. Thylakoids are flattened sacs stacked like coins into grana (singular granum) and joined by unstacked stroma lamellae; the space inside each sac is the lumen. The light reactions run in the thylakoid membranes; the Calvin cycle runs in the stroma, which also holds the chloroplast's own circular DNA (on the order of 100 genes; most chloroplast proteins are now encoded in the nucleus), its bacteria-like 70S ribosomes, and starch grains.

Those bacterial features are the evidence for the endosymbiotic theory: chloroplasts descend from a cyanobacterium engulfed by a eukaryotic cell, just as mitochondria descend from an engulfed aerobic bacterium (an alpha-proteobacterium). The evidence: two membranes, their own circular DNA without histones, 70S ribosomes, division by binary fission (chloroplasts are never built from scratch, only by dividing), bacterial size, and gene sequences closest to cyanobacteria. Glaucophyte algae still keep a layer of bacterial peptidoglycan between their chloroplast membranes. Endosymbiosis is still happening: in 2024 researchers described the nitroplast, a nitrogen-fixing organelle in the marine alga Braarudosphaera bigelowii that evolved from an engulfed cyanobacterium (UCYN-A). This single "primary" endosymbiosis gave rise to the glaucophytes, red algae and green algae (with land plants); brown algae, diatoms, euglenoids and dinoflagellates got their chloroplasts secondhand, by engulfing a red or green alga (secondary endosymbiosis), so their chloroplasts have three or four membranes.

Light and pigments

Only photosynthetically active radiation (PAR, 400 to 700 nm, the visible band) drives photosynthesis; it is a little under half (about 45%) of the energy in sunlight. Shorter wavelengths carry more energy per photon:

PigmentColorAbsorbs mostWhere and what to know
Chlorophyll aBlue-greenViolet-blue (about 430 nm) and red (about 662 nm) in solutionThe main pigment; the special pair at each reaction center is chlorophyll a. A porphyrin ring with magnesium at its center plus a long hydrocarbon (phytol) tail
Chlorophyll bYellow-greenBlue (about 453 nm) and orange-red (about 642 nm)Accessory pigment in green algae and plants; roughly one chlorophyll b for every three chlorophyll a in a typical leaf
Carotenoids: carotenes (orange) and xanthophylls (yellow)Yellow to orangeBlue-violet and blue-green (400 to 500 nm)Accessory pigments that widen the absorbed range and protect against excess light; seen when chlorophyll breaks down in autumn
Phycobilins: phycoerythrin (red), phycocyanin (blue)Red or blueGreen and yellow-orange lightRed algae and cyanobacteria; let red algae photosynthesize in deep water
FucoxanthinBrownBlue-greenBrown algae, diatoms, golden algae
Anthocyanins (not photosynthetic)Red, purple, blueGreenWater-soluble flavonoids in the vacuole; color changes with pH (red in acid, blue in alkaline); give autumn reds and many flower colors

Chlorophyll absorbs blue and red strongly and absorbs green (about 500 to 600 nm) least, so more green light is reflected and transmitted than other colors, which is why leaves look green. (A leaf still absorbs much of the green light, which drives photosynthesis in deeper cell layers.) Grow lights therefore emphasize red and blue. A plot of absorption against wavelength is an absorption spectrum; a plot of photosynthetic rate against wavelength is an action spectrum. In 1882 Theodor Engelmann made the first action spectrum by shining a spectrum of light along a filamentous green alga (Cladophora) and watching aerobic bacteria crowd around the parts lit by blue and red light, where the most O₂ was released.

Light is also needed to make chlorophyll in the first place: seedlings grown in darkness are pale yellow and spindly (etiolated) because in flowering plants one step of chlorophyll synthesis needs light, and many light-activated genes stay off. Leaves can also turn yellow (chlorotic) from too little light or from nitrogen, magnesium or iron shortage.

The light-dependent reactions

The light reactions run in the thylakoid membranes and turn light energy into the two energy carriers the Calvin cycle needs, ATP and NADPH, releasing O₂ as a by-product.

  1. Light harvesting. Hundreds of pigment molecules in light-harvesting (antenna) complexes absorb photons and pass the energy inward to a reaction center, a special pair of chlorophyll a molecules. The antenna itself has no reaction center; it only funnels energy. Light-harvesting complexes are pigment-binding proteins holding chlorophyll a, chlorophyll b and carotenoids. PSII relies on a large, mobile outer antenna (LHCII, the most abundant membrane protein in chloroplasts), while PSI has a large built-in core antenna plus a smaller set of LHCI proteins.
  2. Photosystem II (PSII) acts first. Its reaction center, P680 (it absorbs best at 680 nm), loses an excited electron to the primary acceptor. The oxygen-evolving complex, a cluster of four manganese ions and one calcium on the lumen side of PSII, refills P680 by splitting water (photolysis): 2 H₂O → 4 H⁺ + 4 e⁻ + O₂. The protons stay in the lumen. Manganese deficiency therefore stalls water splitting.
  3. The electron passes along an electron transport chain: plastoquinone (PQ, a mobile carrier in the membrane) → the cytochrome b₆f complex (which pumps protons into the lumen) → plastocyanin (PC, a small copper protein in the lumen). (The cytochrome b₆f complex is the chloroplast's counterpart of mitochondrial Complex III, the cytochrome bc₁ complex.)
  4. Photosystem I (PSI), with reaction center P700, absorbs a second photon and re-energizes the electron, which passes to ferredoxin (Fd, an iron-sulfur protein on the stroma side) and then to the enzyme ferredoxin-NADP⁺ reductase, which makes NADPH: NADP⁺ + 2 e⁻ + H⁺ → NADPH. NADP⁺ is the final electron acceptor.
  5. Chemiosmosis. Water splitting and the PQ/cytochrome pump pile protons up in the lumen. They flow back to the stroma through ATP synthase, which makes ATP from ADP and phosphate (photophosphorylation). A poison that blocks ATP synthase leaves a large proton gradient but no ATP; an uncoupler, which lets protons leak across the membrane, collapses the gradient, so again no ATP is made.

Reasoning about blocked steps: a drug that blocks the cytochrome b₆f complex stops linear and cyclic flow and its proton pumping, so the lumen becomes less acidic (higher pH), the stroma less alkaline, and both ATP and NADPH fall; blocking photosystem I still lets PSII split water and evolve O₂ briefly until the chain backs up; electrons rerouted from ferredoxin back to plastoquinone (and so through cytochrome b₆f) behave like cyclic flow, adding ATP but no NADPH; an uncoupler collapses the gradient so electrons flow but no ATP is made. Plotted by energy, the path looks like a sideways Z (the Z-scheme): water (low energy) up to excited P680, down the chain, up again at P700, down to NADPH. Photosystem II comes before photosystem I in the electron path; the numbers only reflect the order of discovery. Moving one O₂-worth of electrons (four) through both photosystems takes about eight photons (four at each).

Cyclic electron flow uses PSI alone: electrons from ferredoxin pass back to plastoquinone, then through the cytochrome b₆f complex (which pumps protons) and plastocyanin, and return to P700. It pumps protons and makes ATP only, with no NADPH and no O₂. The Calvin cycle uses 3 ATP for every 2 NADPH, a little more ATP than linear flow supplies, and cyclic flow makes up the difference.

PSII sits mainly in the stacked grana, while PSI and ATP synthase sit mainly in the stroma lamellae and the edges of grana, where they face the stroma that holds their substrates (NADP⁺, ADP) and where their bulky stromal parts fit.

The Calvin cycle (light-independent reactions)

The Calvin cycle (also the Calvin-Benson-Bassham cycle, reductive pentose phosphate pathway, or the old "dark reactions", though it runs in the day because it depends on light-made ATP and NADPH and several of its enzymes are switched on by light) runs in the stroma in three phases:

  1. Carbon fixation. RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) attaches CO₂ to the five-carbon sugar RuBP (ribulose-1,5-bisphosphate). The unstable six-carbon product splits at once into two molecules of the three-carbon 3-phosphoglycerate (3-PGA). This is why the pathway is called C₃. RuBisCO is slow, catalyzing only a few reactions per second, so it is often the rate-limiting step, and leaves make enormous amounts of it: RuBisCO is the most abundant protein on Earth. RuBisCO must first be activated: an activator CO₂ molecule (separate from the CO₂ it will fix) and Mg²⁺ bind a lysine in its active site (carbamylation), helped by the enzyme Rubisco activase, which clears inhibitory sugar phosphates from the active site and is itself switched on in light.
  2. Reduction. ATP and NADPH convert 3-PGA to glyceraldehyde-3-phosphate (G3P, a triose phosphate). These steps run part of glycolysis in reverse, which is why the cycle is sometimes called a reversed glycolysis.
  3. Regeneration. Most of the G3P is rearranged, using more ATP, back into RuBP so the cycle can continue.
Per…CO₂ fixedATP usedNADPH usedNet product
1 turn132(1/3 of a G3P)
3 turns3961 G3P (3 carbons)
6 turns618122 G3P = 1 glucose equivalent

Six turns fix six CO₂ into 12 G3P; 10 of them regenerate six RuBP and 2 leave the cycle. The direct carbohydrate product is G3P, not glucose. It is exported from the chloroplast through a triose phosphate/phosphate translocator (an antiporter that swaps each triose phosphate for an inorganic phosphate) and built into sucrose in the cytosol for transport, or kept in the chloroplast and built into starch for storage. Most fixed carbon ends up as sucrose, starch and cellulose, not free glucose. The Calvin cycle uses ATP and NADPH and returns ADP and NADP⁺ to the thylakoids; it makes neither.

Photorespiration, C₄ and CAM

RuBisCO can also grab O₂ instead of CO₂. That oxygenase reaction makes one 3-PGA and one two-carbon phosphoglycolate, which the plant must salvage through a pathway spread across the chloroplast, the peroxisome and the mitochondrion, releasing CO₂ and spending ATP. This photorespiration fixes no carbon and wastes energy, and it is common, not rare: it rises sharply when the leaf is hot and its stomata are closed (on hot, dry days, or under bright light with low CO₂), because O₂ from the light reactions builds up and CO₂ runs down inside the leaf, and because RuBisCO's preference for CO₂ over O₂ falls as temperature rises. C₃ plants in warm conditions can lose roughly a quarter of their fixed carbon this way.

C₄ and CAM plants avoid it by fixing CO₂ first with PEP carboxylase, an enzyme that adds bicarbonate (HCO₃⁻) to the three-carbon phosphoenolpyruvate (PEP) to make the four-carbon oxaloacetate. PEP carboxylase has a much higher affinity for CO₂ (as bicarbonate) than RuBisCO and does not react with O₂. The four-carbon acid (malate or aspartate) is later broken down to release CO₂ at high concentration around RuBisCO.

  • C₄ (spatial separation). Mesophyll cells fix CO₂ with PEP carboxylase; malate or aspartate moves through plasmodesmata into the bundle-sheath cells, which wrap the veins in a wreath (Kranz anatomy, German for wreath); there it is decarboxylated, and the Calvin cycle runs on the concentrated CO₂. Pyruvate returns to the mesophyll and is turned back into PEP at a cost of ATP, so C₄ photosynthesis needs more ATP per CO₂ (about 5 instead of 3). It pays off in hot, bright, dry places (grasslands, savannas, warm-season crops) because stomata can stay narrower and photorespiration nearly disappears. C₄ examples: corn (maize), sugarcane, sorghum, millets, crabgrass, switchgrass, amaranth.
  • CAM (temporal separation). Crassulacean acid metabolism (named for the stonecrop family, Crassulaceae) opens stomata at night, when air is cool and humid, fixes CO₂ with PEP carboxylase and stores it as malic acid in the vacuole (the leaf becomes sour by dawn). By day the stomata stay closed, malate releases CO₂ inside the leaf, and the Calvin cycle runs. Some plants switch between C₃ and CAM depending on conditions (facultative CAM): the common ice plant (Mesembryanthemum crystallinum) runs C₃ when watered and shifts to CAM under drought or salt stress. Under severe drought some CAM plants keep their stomata shut day and night and recycle their own respired CO₂ (CAM idling); not all CAM plants can do this. CAM gives the best water-use efficiency of the three and suits deserts and epiphytes: cacti, agave, pineapple, jade plant and other succulents, many orchids and bromeliads, and (only weakly) Welwitschia.
  • C₃ is the ancestral, most common pathway (the large majority of plant species, commonly quoted at around 85 to 95%): wheat, rice, soybean, potato, spinach, most trees. It is efficient in cool, moist, moderately lit conditions.
C₃C₄CAM
First CO₂ acceptor and enzymeRuBP + RuBisCOPEP + PEP carboxylasePEP + PEP carboxylase
First stable product3-PGA (3 carbons)Oxaloacetate (4 carbons)Oxaloacetate → malate
Separation of stepsNoneIn space (mesophyll vs. bundle sheath)In time (night vs. day)
Stomata openDayDayNight
PhotorespirationHigh in heatVery lowVery low
Water-use efficiencyLowestHigherHighest
Photosynthetic efficiencyBest in cool, moist conditionsHighest in hot, bright conditions (most productive crops per unit light, water and nitrogen)Low growth rates; built for survival
Share of speciesMostFew (about 3%), but many grasses and key cropsSeveral percent (succulents, epiphytes)
Two side-by-side CAM cells with numbered parts. Left (night, moon): the stoma is open and CO2 is fixed into an acid stored in the vacuole. Right (day, sun): the stoma is closed and the stored acid feeds the Calvin cycle in the chloroplast.
CAM separates the two stages by time. At night CO2 enters the open stoma and PEP carboxylase fixes it into malate, stored as malic acid in the vacuole. By day the stoma stays shut and the stored malate releases CO2 to the Calvin cycle.Credit: Aviphile, CC BY-SA 3.0, via Wikimedia Commons · source

Rates and limiting factors

The rate of photosynthesis depends on light intensity, CO₂ concentration and temperature (plus water and nutrients, which act through stomata and leaf chemistry). Whichever factor is in shortest supply sets the rate (Blackman's law of limiting factors): on a light-response curve the rate climbs with light, then levels off at the light saturation point, where CO₂ or temperature has become limiting. The light compensation point is the light level at which photosynthesis exactly balances respiration (net gas exchange zero); below it the plant loses carbon. Temperature gives a rise-and-fall curve because enzymes slow in the cold and denature or photorespire in heat. Rising atmospheric CO₂ can raise photosynthesis in C₃ crops (CO₂ fertilization) and lets plants partly close their stomata, which lowers transpiration.

Photosynthetic rate can be measured as O₂ released (bubbles from an aquatic plant such as Elodea, or leaf disks that float as O₂ fills their air spaces), CO₂ taken up, or dry mass gained. The overall efficiency is low: only a few percent of the light energy striking a leaf (typically quoted around 1 to 3% for crops over a season) ends up stored in sugar. The classic starch test shows where photosynthesis happened: keep a plant in the dark for a day to use up its starch (destarching), light it with part of a leaf covered (or use a variegated leaf), then boil the leaf, soak it in hot ethanol to remove chlorophyll, and add iodine. Only the parts that were lit and green turn blue-black, showing that light and chlorophyll are both needed.

Sun and shade leaves. Leaves that develop in full sun are smaller and thicker, with more layers of palisade cells, more RuBisCO, higher light saturation and compensation points and a higher chlorophyll a-to-b ratio. Shade leaves are larger and thinner, with more chlorophyll per reaction center, relatively more chlorophyll b (more antenna), and low compensation points, so they make a profit in dim light. A shade-adapted plant moved into full sun suffers photoinhibition (damage to PSII) and leaf scorch.

Cellular respiration

Respiration runs in every living plant cell, day and night, and releases the energy stored in sugar as ATP:

C6H12O6+6 O2→6 CO2+6 H2O+energy (ATP and heat)C_6H_{12}O_6 + 6\,O_2 \rightarrow 6\,CO_2 + 6\,H_2O + \text{energy (ATP and heat)}
StageLocationMain inputs → outputs (per glucose)
GlycolysisCytosolGlucose → 2 pyruvate; net 2 ATP and 2 NADH; no O₂ needed
Pyruvate oxidationMitochondrial matrix2 pyruvate → 2 acetyl-CoA + 2 CO₂ + 2 NADH
Krebs (citric acid) cycleMitochondrial matrix2 turns → 4 CO₂, 6 NADH, 2 FADH₂, 2 ATP
Oxidative phosphorylationInner mitochondrial membraneNADH and FADH₂ feed the electron transport chain; carriers include ubiquinone (coenzyme Q) and cytochromes; O₂ is the final electron acceptor (forming water); chemiosmosis through ATP synthase makes most of the ATP

Total yield is about 30 to 32 ATP per glucose by current estimates (older texts say 36 to 38, counting each NADH as 3 ATP and each FADH₂ as 2; newer texts use about 2.5 and 1.5). The CO₂ of respiration comes from pyruvate oxidation and the Krebs cycle; the CO₂ of photosynthesis enters through RuBisCO. Respiration is also the source of carbon skeletons for amino acids and other molecules.

Without O₂ (in waterlogged roots or germinating seeds under water), plant cells fall back on fermentation, mainly alcoholic (pyruvate → ethanol + CO₂), which regenerates NAD⁺ so glycolysis can continue but yields only 2 ATP per glucose; ethanol buildup is one reason flooding kills roots. Plant mitochondria also have a cyanide-resistant alternative oxidase that releases energy as heat instead of ATP; thermogenic flowers such as skunk cabbage and voodoo lily use it to warm their inflorescences and spread scent to pollinators. Respiration speeds up with temperature (roughly doubling per 10 °C, a Q₁₀ of about 2), which is why produce is stored cold, and many fruits show a burst of respiration (the climacteric) as they ripen.

PhotosynthesisCellular respiration
WhereChloroplasts (green cells)Cytosol and mitochondria (all living cells)
WhenIn lightAlways
EnergyLight → chemical (stored)Chemical → ATP and heat (released)
CarbonFixes CO₂ (reduction)Releases CO₂ (oxidation)
Gas exchangeTakes in CO₂, gives off O₂Takes in O₂, gives off CO₂
ATP made byPhotophosphorylation (thylakoids)Substrate-level and oxidative phosphorylation

Discovering photosynthesis

WhoWhenFinding
Jan Baptista van Helmont1640sA willow's mass came mostly from something other than soil (he credited water)
Joseph Priestley1771A sprig of mint "restored" air that a candle had burned out
Jan Ingenhousz1779Only green parts, and only in light, restore the air
Jean Senebier; Nicolas-Théodore de Saussure1780s; 1804Plants take up CO₂ (Senebier); water and CO₂ both add to plant mass (de Saussure)
Theodor Engelmann1882First action spectrum: blue and red light drive O₂ release
Cornelis van Niel1930sSulfur bacteria split H₂S instead of water, so plants' O₂ must come from water
Robin Hill1937Isolated chloroplasts release O₂ in light with an artificial electron acceptor (the Hill reaction)
Samuel Ruben and Martin Kamen1941Heavy-oxygen (¹⁸O) labeling confirmed the O₂ comes from water
Melvin Calvin, Andrew Benson, James Bassham1950s (Nobel to Calvin, 1961)Traced carbon-14 through the Calvin cycle using the alga Chlorella
Daniel Arnon1954Photophosphorylation: chloroplasts make ATP in light
Peter Mitchell1961 (Nobel 1978)Chemiosmotic theory of ATP synthesis
Marshall Hatch and Roger Slack1966Worked out the C₄ pathway in sugarcane

Genetics and reproduction

Mendelian genetics in plants

Gregor Mendel worked out the rules of inheritance (published 1866) with garden peas (Pisum sativum). Peas were a good choice: they grow quickly and give many offspring, have clear either-or traits (seed shape and color, flower color, pod shape and color, flower position, stem length: seven traits in all), come in true-breeding lines, and normally self-pollinate inside a closed flower but can be hand-crossed by removing a flower's anthers and dusting pollen from another plant's anthers onto its stigma.

Each trait is controlled by a gene with two alleles at the same locus on homologous chromosomes; one allele may be dominant over a recessive one. The genotype is the allele pair (TT, Tt, tt); the phenotype is the observable trait. Homozygous means two identical alleles; heterozygous, two different ones. Mendel's laws:

  • Segregation: the two alleles of a gene separate during gamete formation (meiosis), so each gamete carries one.
  • Independent assortment: alleles of different genes sort into gametes independently of each other (true for genes on different chromosomes or far apart on one).
  • Dominance: in a heterozygote, the dominant allele determines the phenotype.
CrossPhenotype ratioGenotype ratio
Monohybrid, Tt × Tt3 : 11 TT : 2 Tt : 1 tt
Testcross, Tt × tt1 : 11 Tt : 1 tt
Dihybrid, TtGg × TtGg9 : 3 : 3 : 19 genotypes
Dihybrid testcross, TtGg × ttgg1 : 1 : 1 : 1
Incomplete dominance, Rr × Rr (red × white gives pink F₁)1 red : 2 pink : 1 whiteSame as phenotype

For two or more independent genes, find each gene's probability separately and multiply. A testcross with the homozygous recessive reveals an unknown genotype.

A Punnett square lays the possible gametes of one parent along the top and the other's down the side; each box is one equally likely offspring genotype. For Tt × Tt the boxes are TT, Tt, Tt and tt, giving the 1 : 2 : 1 genotype and 3 : 1 phenotype ratios.

Incomplete dominance gives a blended heterozygote: red × white snapdragons give all pink F₁ (0% red), and pink × pink gives 1 red : 2 pink : 1 white. In codominance both alleles show fully in the heterozygote (for example, a plant heterozygous for two forms of an enzyme shows both bands on a gel, or a flower with both red and white patches rather than pink). Epistasis, where one gene masks another, modifies the 9 : 3 : 3 : 1 ratio:

RatioTypePlant example
9 : 7Complementary genes (both dominant alleles needed)Purple vs. white sweet pea flowers
9 : 3 : 4Recessive epistasisVarious flower and seed colors
12 : 3 : 1Dominant epistasisWhite, yellow and green summer squash fruit
15 : 1Duplicate genes (either dominant allele suffices)Seed-capsule shape in shepherd's purse

Genes close together on one chromosome are linked and tend to be inherited together; crossing over separates them at a frequency that grows with distance, which is how genes are mapped. DNA itself follows Chargaff's rule: the amount of A equals T and G equals C (because A pairs with T and G with C), so purines equal pyrimidines (A + G = T + C) in any species, though the A+T to G+C ratio varies. Barbara McClintock discovered transposons ("jumping genes") from mottled maize kernels (Nobel 1983).

Plant-specific genetics.

  • Polyploidy (more than two chromosome sets) is common and often creates new species in one generation. Autopolyploids double their own genome; allopolyploids combine the genomes of two species after hybridization. Bread wheat is an allohexaploid built from three ancestral genomes (AABBDD, 2n = 6x = 42), which is why wheat genetics is notoriously hard; cultivated strawberries are octoploid; most bananas are sterile triploids. Seedless watermelons are triploids made by crossing a tetraploid with a diploid. Colchicine, which blocks spindle formation, is used to double chromosome numbers.
  • Organelle inheritance. Chloroplast and mitochondrial genes are usually inherited only through the mother (the egg) in flowering plants. Conifers are the common exception: their chloroplasts are usually inherited through the pollen (paternally); mitochondria come from the mother in the pine family but through the pollen in the cypress family (including redwoods). Cytoplasmic male sterility, carried in mitochondria, is used to make hybrid seed; in 1970 the widely used Texas male-sterile cytoplasm made most U.S. corn susceptible to southern corn leaf blight.
  • Ploidy of plant structures. Spores, pollen, the embryo sac and its egg, synergids and antipodal cells are haploid (n); the zygote, embryo, seed coat and fruit wall are diploid (2n, the seed coat and fruit being maternal tissue); endosperm is triploid (3n). In gymnosperms the seed's food store is the haploid female gametophyte.
  • Self-incompatibility genes (the S-locus) block pollen carrying an S allele that matches the pistil's. In the nightshade and rose families the style makes S-RNases that destroy RNA in "self" pollen tubes; in the mustard family recognition happens at the stigma surface. In gametophytic self-incompatibility the pollen's own (haploid) S allele decides: S1 pollen landing on an S1S2 pistil is rejected because S1 matches, while S3 pollen on the same pistil grows normally. In sporophytic self-incompatibility (mustards) the pollen's behavior is set by the diploid genotype of the plant that made it. Self-incompatibility enforces outcrossing; in some species it weakens in older flowers that were never cross-pollinated, giving at least some seed.
  • Model organisms. Arabidopsis thaliana (small genome, about six-week life cycle, self-pollinating, thousands of seeds, easy to transform) is the main model; rice, whose genome was the first crop genome sequenced (2002, finished 2005), and maize are the grass models.

Sexual reproduction in flowering plants

Pollination moves pollen from an anther to a receptive stigma; fertilization follows when the pollen tube delivers sperm to the ovule (see Flowers for the pollen tube and double fertilization). Self-pollination (pollen reaching a stigma of the same flower or plant) guarantees seed without a partner and is more common in angiosperms, with their bisexual flowers, than in gymnosperms; some violets even make closed, self-pollinating (cleistogamous) flowers. Cross-pollination mixes genes. Species that evolve toward regular self-pollination tend to lose the costly lures and rewards of outcrossers (the "selfing syndrome"): smaller, less showy flowers, less scent and reduced nectar, and fewer pollen grains per ovule. Plants avoid selfing and inbreeding depression by:

  • Dioecy (separate male and female plants);
  • Dichogamy: anthers and stigma mature at different times, either pollen first (protandry) or stigma first (protogyny), common in both bisexual flowers and monoecious plants;
  • Herkogamy: anthers and stigma physically separated in the flower; heterostyly (pin and thrum flowers with long and short styles, as in primroses) is a special case;
  • Self-incompatibility (above).
Pollination syndromeTypical flower traits
WindSmall, dull or no petals; lots of light, smooth pollen; long, exposed anthers; large feathery stigmas; no nectar or scent (grasses, corn, oaks, birches, conifers)
BeeBlue, purple, yellow or white (bees cannot see red but do see ultraviolet); sweet scent; landing platform; nectar guides (often UV)
ButterflyBright red, orange or pink; upright, with a landing platform; long narrow tube; daytime
Bird (hummingbird)Red or orange; tubular; abundant dilute nectar; little or no scent (birds smell poorly); no landing platform
BatPale; opens at night; musky or fruity scent; large and sturdy, often hanging outside the foliage (agave, saguaro, durian, baobab)
MothWhite; opens at night; strong sweet scent; long narrow tube (yucca's obligate yucca moth)
FlyBrown or purple; carrion-like scent (carrion flowers, Rafflesia, corpse flower)
BeetleLarge, bowl-shaped, fruity or spicy scent, lots of pollen (magnolias, water lilies)
WaterPollen carried on or under the water surface (seagrasses, Vallisneria)

Flowers and pollinators shaped each other's traits over time (co-evolution). Pollinators besides insects include birds, bats, a few non-flying mammals and, rarely, lizards on islands. A gardener who wants no bees but still wants pollination should choose red, tubular, scentless flowers for hummingbirds. More generally, co-evolution is reciprocal evolutionary change in two interacting species, each adapting to the other: flowers and pollinators, plants and mycorrhizal fungi or rhizobia, and arms races between plant defenses and herbivore counter-defenses (milkweed toxins and monarchs). One species simply living on or near another, without each driving the other's evolution, is not co-evolution.

Seeds disperse by wind (dandelion pappus, maple samaras), water (coconut), animals (burrs, fleshy fruits eaten and passed) and explosive pods (Impatiens); see Fruits and seeds for the full table.

Asexual reproduction

Asexual reproduction makes clones by mitosis. Natural methods include stolons, rhizomes, tubers, bulbs and corms (see Stems), suckers from roots (aspen, raspberry), plantlets on leaves (Kalanchoe), gemmae in liverworts, fragmentation, and apomixis, seed formed without fertilization, so the "seedlings" are clones of the mother (dandelions, many citrus and blackberries). Gardeners add cuttings, layering, division, grafting and tissue culture (see Horticulture). The connected shoots of a clone (ramets, such as aspen trunks or strawberry plantlets) often stay physiologically integrated, sharing water, sugar and nutrients through their rhizomes or stolons so that a ramet in a good patch can support one in a poor patch. Clonal spread is fast and keeps a successful genotype, needs no pollinator or mate, and gives offspring a head start from the parent's food. But a clonal patch carries little genetic variation, so one disease or one environmental change can hit every plant the same way, and harmful mutations accumulate over many cell divisions because there is no sexual recombination to purge them. Salt-marsh cordgrass (Spartina), beach and dune grasses and reeds spread mainly this way, by rhizomes, building dense marshes and stabilizing dunes.

Paleobotany and plant evolution

Paleobotany is the study of fossil plants: identifying them, reconstructing whole plants from scattered organs, placing them in evolutionary history and using them to read past climates and environments (it does not attempt the impossible task of counting every extinct species, and it does not study ancient bacteria or animals). Plant fossils form in several ways: compressions (flattened organic films, common in shale and coal), impressions (an imprint with the tissue gone), petrifactions or permineralizations (minerals such as silica fill and preserve cells, as in petrified wood, coal balls and the Rhynie chert), casts and molds, and inclusions in amber (fossil resin). Fossil pollen and spores, protected by sporopollenin, survive almost anywhere; palynology uses them to reconstruct past vegetation and climate, and pollen diagrams from lake and bog sediments track how forests changed after the last ice age. In the lab, paleobotanists free cuticles and spores from rock with acids (maceration), make acetate peels of polished coal balls (etching the surface and lifting off a film of cells), and grind petrified material into thin sections for the microscope. Fossils are dated by the rocks around them (radiometric dating of volcanic layers, index fossils).

Time (approximate)Event
Cambrian to OrdovicianLand plants descend from freshwater charophyte green algae (charophyte orders such as Coleochaetales and Charales branch before land plants)
Middle Ordovician, about 470 million years agoEarliest spores from land plants (bryophyte-grade plants, probably liverwort-like)
Silurian, about 430 million years agoEarly vascular plants such as Cooksonia: leafless, forked stems tipped with sporangia
Early Devonian, about 407 million years agoThe Rhynie chert (Scotland) preserves whole early plant communities in silica: Rhynia, Aglaophyton, with mycorrhizal fungi already in their tissues
Devonian, about 419-359 million years agoRapid diversification ("Devonian explosion"): lycophytes, ferns and horsetails; roots, leaves and wood appear; stomata were already present in the earliest vascular plants (the oldest fossil stomata date to the late Silurian, about 420 million years ago)
Middle to Late Devonian, about 385-360 million years agoFirst forests; Archaeopteris, a tree with true wood but reproducing by spores; the first seeds (seed ferns)
Carboniferous, about 359-299 million years agoSwamp forests of giant lycophytes (Lepidodendron, Sigillaria), giant horsetails (Calamites), tree ferns and seed ferns form most of the world's coal; Cordaites and the first conifers appear late in the period
Permian, about 299-252 million years agoClimates dry; gymnosperms spread; the seed fern Glossopteris covers Gondwana (its fossils on now-separated southern continents were early evidence for continental drift)
Triassic to JurassicAge of gymnosperms: conifers, cycads, ginkgos and the extinct cycad-like Bennettitales
Early Cretaceous, about 130 million years agoFlowering plants appear (Archaefructus, Montsechia) and then diversify rapidly alongside pollinating insects, dominating most landscapes by the end of the Cretaceous
CenozoicGrasslands spread; C₄ grasses expand in the late Miocene, about 8 to 5 million years ago
Reconstruction of Cooksonia, a small leafless plant with slender stems that fork in two several times, each branch ending in a flattened, trumpet-shaped sporangium.
A reconstruction of Cooksonia, one of the earliest vascular plants. Notice what is missing: no leaves, no roots and no seeds, only forking stems topped by sporangia.Credit: Original by Smith609. Derivative by Peter coxhead, CC BY 3.0, via Wikimedia Commons · source

Read the timeline as a series of innovations, each solving a problem of life on land: the cuticle and stomata (drying out), sporopollenin-walled spores (surviving dry air), vascular tissue with lignin (standing tall and moving water), roots and leaves (capturing water and light), seeds (reproducing without swimming sperm and surviving dry spells), and flowers and fruits (recruiting animals to move pollen and seeds). Cell walls, by contrast, were inherited from algal ancestors and did not evolve on land. Partnerships with mycorrhizal fungi, already present in the earliest land plant fossils, helped them extract water and phosphorus from bare mineral soil.

Fossil leaves also record past climates: the stomatal index (stomata as a share of all epidermal cells) falls when CO₂ is high, so fossil cuticles track ancient CO₂; leaf-margin analysis uses the fact that the share of woody species with smooth (entire) leaf margins rises with mean annual temperature, while toothed margins dominate cool forests; larger leaves indicate wetter climates; and carbon-isotope ratios reveal C₃ versus C₄ vegetation. Two kinds of leaves. Microphylls, small leaves with a single unbranched vein, are found only in lycophytes and probably arose as outgrowths of the stem surface (the enation hypothesis). Megaphylls, leaves with branching veins, are found in ferns, horsetails and seed plants (gymnosperms and angiosperms) and evolved from flattened, webbed branch systems (the telome theory). Large megaphylls spread only in the Late Devonian and Carboniferous, after atmospheric CO₂ fell steeply (by roughly 90%): with less CO₂, leaves needed more stomata, and the extra transpiration cooled broad leaves enough to keep them from overheating.

Bryophytes fossilize poorly, but Triassic liverworts such as Naiadita lanceolata are known in detail. Living fossils are modern species little changed from fossil relatives: Ginkgo biloba (the sole survivor of an order that was diverse in the Jurassic), the dawn redwood (Metasequoia, known from fossils before living trees were found in China in the 1940s), the Wollemi pine (found in Australia in 1994), cycads, and horsetails.

History of botany

Expect matching and short-answer questions that pair a person with a discovery. Botany began as the study of useful and medicinal plants: before modern biology, much of it was the work of herbalists and physicians preparing plant drugs.

Ancient and medieval. Theophrastus classified plants by growth form into trees, shrubs, subshrubs and herbs, and also distinguished them by features such as habitat, wild versus cultivated, and evergreen versus deciduous. His books also record medicinal plants and the lore of root-gatherers, such as hellebore and birthwort (Aristolochia, named for its use in childbirth; it is now known to contain kidney-damaging aristolochic acids). Pliny the Elder's Natural History and Dioscorides' De Materia Medica carried classical plant knowledge forward. Through the European Middle Ages botany made little original progress: scholars mostly copied the ancient texts, while Islamic scholars preserved and extended them. Herbs were used in food and medicine for thousands of years, long before the 1800s (traditional systems such as Ayurveda in India and Chinese herbal medicine are ancient).

Renaissance and the age of exploration. Printing, accurate woodcut illustrations and specimens pouring in from voyages to the Americas and Asia revived botany. The German "fathers of botany", Otto Brunfels, Hieronymus Bock and Leonhart Fuchs, published illustrated herbals drawn from real plants; the first botanical gardens (Pisa and Padua, 1540s) and the first herbaria of pressed specimens date from this time. The microscope opened plant anatomy.

ReferencePeople in the history of botany· 33 rows
33 rows
PersonWhenContribution
Theophrastusabout 371-287 BCEStudent of Aristotle; wrote Enquiry into Plants and On the Causes of Plants; called the father of botany
Dioscorides1st century CEDe Materia Medica, the standard guide to medicinal plants for some 1,500 years
Brunfels, Bock, Fuchs1530s-1540sIllustrated German herbals; Fuchs is honored in the name Fuchsia
Andrea Cesalpino1583Early classification based on fruits and seeds
Jan Baptista van Helmont1600sWillow experiment: the tree gained mass while the soil barely changed, so he credited water
Robert Hooke1665Named "cells" after viewing cork in Micrographia
Nehemiah Grew; Marcello Malpighi1670s-1680sFounders of plant anatomy (Grew is usually called the father of plant anatomy); Grew described flower parts and suggested stamens are male organs
Rudolf Jakob Camerarius1694Showed experimentally that plants reproduce sexually and need pollen to set seed
Stephen Hales1727Vegetable Staticks: measured transpiration and root pressure; founder of plant physiology
John Bartram1728Founded what is now the oldest surviving botanical garden in the United States, in Philadelphia
Carl Linnaeus1753Swedish; Species Plantarum, the starting point of binomial plant names; an artificial "sexual system" of classification; called the father of taxonomy
Joseph Priestley1771A plant "restored" air that a candle or mouse had used up
Jan Ingenhousz1779Showed that only the green parts of plants, and only in light, restore the air
Christian Konrad Sprengel1793Described how flowers are built for insect pollination (nectar guides, cross-pollination)
Alexander von HumboldtEarly 1800sFounded plant geography: vegetation zones by latitude and altitude
Robert Brown1827; 1831Brownian motion (watching tiny particles released from pollen grains); described the cell nucleus in orchid cells
Matthias Schleiden1838All plant tissues are made of cells (cell theory, with Theodor Schwann for animals)
Charles Darwin1859-1880Evolution by natural selection; books on orchid pollination, carnivorous plants and plant movement
Gregor Mendel1866Laws of inheritance from pea crosses; rediscovered in 1900 by Hugo de Vries, Carl Correns and Erich von Tschermak
Charles and Francis Darwin1880Coleoptile tips sense light and send a signal that causes bending
Dmitri Ivanovsky; Martinus Beijerinck1892; 1898Tobacco mosaic disease agent passes through bacterial filters: the discovery of viruses
Sergei Nawaschin1898Discovered double fertilization
Christen Raunkiær1904-1907Life-form system based on where renewal buds survive the unfavorable season
Luther Burbank; George Washington CarverLate 1800s-early 1900sBurbank bred hundreds of cultivars (the Burbank potato, whose russet-skinned sport became the Russet Burbank); Carver promoted peanuts, sweet potatoes and crop rotation to restore Southern soils
Liberty Hyde BaileyLate 1800s-early 1900sAmerican horticulturist at Cornell; coined "cultivar" (1923) and is called the father of American horticulture
Wightman Garner and Harry Allard1920Discovered photoperiodism, working with Maryland Mammoth tobacco and soybeans at the USDA
Frits Went1926Isolated the bending signal in agar blocks: auxin
Eiichi Kurosawa1926Showed the "foolish seedling" fungus secretes a growth substance: gibberellin
Nikolai Vavilov1920s-1930sCenters of origin of cultivated plants; built a huge seed collection
Melvin Calvin1950s (Nobel 1961)Traced carbon fixation with radioactive carbon-14: the Calvin cycle
Barbara McClintock1940s-1950s (Nobel 1983)Transposable elements in maize
Norman Borlaug1960s (Nobel Peace 1970)High-yield semi-dwarf wheat and the Green Revolution
Tu Youyou1970s (Nobel 2015)Artemisinin from sweet wormwood (Artemisia annua) against malaria

Plants in ecosystems

Energy and nutrient cycles

Plants are primary producers (autotrophs): almost all energy in terrestrial food webs enters through photosynthesis, so plants (and, in water, algae and cyanobacteria) sit at the base of nearly every ecological pyramid (deep-sea vent communities run on chemosynthesis instead). Gross primary production (GPP) is the total carbon fixed; net primary production (NPP) is what remains after the plants' own respiration, and NPP is what herbivores can eat. Global NPP is roughly 100 billion tonnes of carbon per year, split about evenly between land plants and ocean phytoplankton; marine phytoplankton (including cyanobacteria such as Prochlorococcus, and diatoms) therefore produce roughly half of the oxygen made each year. Phytoplankton includes both prokaryotic cyanobacteria (Prochlorococcus, the most abundant photosynthetic organism on Earth, and Synechococcus) and eukaryotic algae (diatoms, dinoflagellates, coccolithophores); tests may credit either "algae" or "cyanobacteria", so read the options. Only about 10% of the energy at one trophic level typically reaches the next, because most is lost as heat in respiration. Biomass is the total mass of living (or recently living) organic matter, a renewable source of food, fuel and materials. A bottom-up effect starts at the producers: a change in plant growth (drought, fertilizer, a crop failure) ripples up through every consumer level, whereas a top-down cascade starts with predators (or overhunting of them).

Carbon cycle. Photosynthesis (the Calvin cycle) pulls CO₂ from the air; respiration (pyruvate oxidation and the Krebs cycle), decomposition and burning return it. Forests and soils store large carbon pools, and coal, oil and gas are ancient plant and plankton carbon. Deforestation disrupts the cycle mainly by cutting photosynthetic uptake and releasing the carbon stored in wood and soil, so atmospheric CO₂ rises. Rising CO₂ can boost photosynthesis in C₃ crops (CO₂ fertilization) and lets plants use water more efficiently, but heat, drought and shifting growing zones (USDA hardiness zones are moving north) offset much of the gain. Ranked by size, Earth's carbon reservoirs are sedimentary rocks (limestone and organic carbon, by far the largest), then the oceans (mostly dissolved inorganic carbon in deep water), then soils and fossil-fuel deposits (similar in size; estimates vary on which is larger), the atmosphere and living vegetation; soils hold roughly two to four times as much carbon as either the atmosphere or all plant biomass.

Water cycle. Plants pull water from the soil and release it as vapor through transpiration; over land, transpiration makes up most of the water moving from the surface to the air, so clearing forests can reduce regional rainfall. Vegetation also slows runoff, lets rain soak in and holds soil.

Nitrogen cycle. Nitrogen is part of every amino acid, protein, nucleic acid and chlorophyll molecule, and it is the mineral nutrient plants need in the largest amount, yet plants cannot use atmospheric N₂. They absorb nitrogen as nitrate (NO₃⁻, most common) and ammonium (NH₄⁺) through their roots.

StageWhat happensWho does it
Nitrogen fixationN₂ → NH₃/NH₄⁺Diazotrophs: rhizobia (Rhizobium, Bradyrhizobium) in legume root nodules, Frankia in alder nodules, free-living soil bacteria (Azotobacter), and cyanobacteria (Anabaena in Azolla, Nostoc in cycads and hornworts); also lightning and the industrial Haber-Bosch process
AmmonificationOrganic nitrogen → NH₄⁺Decomposers (bacteria and fungi)
NitrificationNH₄⁺ → NO₂⁻ (by Nitrosomonas) → NO₃⁻ (by Nitrobacter)Nitrifying bacteria (chemoautotrophs) in aerated soil
AssimilationNO₃⁻ and NH₄⁺ → amino acidsPlants (nitrate reductase reduces nitrate first)
DenitrificationNO₃⁻ → NO₂⁻ → NO → N₂O → N₂, returned to the airAnaerobic bacteria (such as Pseudomonas) using nitrate, nitrite, nitric oxide and nitrous oxide reductases, especially in waterlogged soil

Nitrification is an oxidation that consumes oxygen and releases acid: NH₄⁺ + 1.5 O₂ → NO₂⁻ + 2 H⁺ + H₂O (ammonia oxidizers such as Nitrosomonas), then NO₂⁻ + 0.5 O₂ → NO₃⁻ (nitrite oxidizers such as Nitrobacter); the H⁺ released is one reason ammonium fertilizers acidify soil. The enzyme nitrogenase breaks the triple bond of N₂. Only prokaryotes (some bacteria and archaea) make nitrogenase; no plant can fix nitrogen itself, which is why fixation always involves bacterial partners (and why the algal nitroplast is remarkable). Nitrogenase appears to have a single evolutionary origin, and its core genes (the nif genes) are shared by all nitrogen fixers; related nif genes (nifE and nifN) help assemble the iron-molybdenum cofactor. It contains iron and molybdenum, uses a great deal of ATP (about 16 ATP per N₂), and is destroyed by oxygen, so legume nodules keep O₂ low with leghemoglobin, which makes them pink inside. In the legume partnership the plant supplies sugar and the bacteria supply fixed nitrogen (mutualism), which is why crop rotations follow legumes with nitrogen-hungry crops like corn. Haber-Bosch fertilizer now fixes about as much nitrogen as all natural processes on land; runoff of it causes eutrophication (algal blooms and dead zones), nitrate in groundwater and emissions of the greenhouse gas nitrous oxide.

Phosphorus cycle. Phosphorus has no significant gas phase; it comes from weathering rock, moves through soil and organisms, and is often the nutrient that limits growth. Plants absorb it as phosphate ions (H₂PO₄⁻ and HPO₄²⁻) dissolved in soil water. It binds tightly to soil particles and moves slowly, so plants rely on mycorrhizae and, in some families, cluster roots that release acids to free it. Phosphorus runoff is the main trigger of freshwater algal blooms.

Soil. Soil is weathered rock (mineral particles), organic matter (humus), water, air and organisms. Its layers (horizons) are the O horizon (leaf litter), A (topsoil, dark with humus, where most roots and soil life are), E (a leached zone in some soils), B (subsoil, where clay and minerals accumulate), C (weathered parent material) and R (bedrock). Particles are sorted by size: sand (0.05 to 2 mm, mostly quartz, silicon dioxide), silt (0.002 to 0.05 mm) and clay (under 0.002 mm). The soil texture triangle names a soil from its percentages of sand, silt and clay. Small particles hold more water and nutrients because a gram of clay has an enormous total surface area for water films to cling to, and clay (and humus) particles carry negative charges that attract and hold positively charged nutrient ions (cations). Sandy soils (mostly sand, with little silt and clay) have large pores, drain fastest and are the most permeable, but hold little water or nutrients; clay soils hold the most water and the most nutrients (highest cation exchange capacity, CEC, the ability to hold positively charged nutrient ions such as Ca²⁺, Mg²⁺, K⁺ and NH₄⁺ against leaching) but drain slowly and compact easily; loams balance the two. Waterlogged soil runs out of oxygen, so roots suffocate, denitrification removes nitrogen, and toxic reduced compounds build up. Leaf litter, diverse plant cover and organic matter support rich communities of soil invertebrates, fungi and bacteria. Some wood-decaying fungi even glow (foxfire). Practices that protect soil include conservation tillage (no-till), cover crops, crop rotation, contour plowing, terracing on slopes, windbreaks and adding organic matter. The Dust Bowl of the 1930s showed what happens when deep-rooted prairie grasses are plowed up in a drought-prone region and the soil is left bare. Many U.S. states have an official state soil (Wisconsin's is the Antigo silt loam; Texas's is the Houston Black clay). The scientific study of soils is pedology (and of soils as a medium for crops, edaphology).

Competition in the plant community

Plants compete for light, water and nutrients (and space and pollinators), both with their own species (intraspecific competition) and with others (interspecific competition). Light competition is one-sided: a taller plant shades a shorter one, but not the reverse. Root competition for water and nutrients is more symmetric. In grasslands, plants compete for light by growing tall and slender; in forests, the canopy captures most light. The botanist Augustin Pyramus de Candolle wrote in 1820 that all plants of a region are "at war" with one another, an idea Darwin built on.

  • Exploitative vs. interference competition. In exploitative (scramble) competition plants simply use up a shared resource first (roots draining soil water); in interference competition one directly harms or blocks another, as with allelopathy or physical crowding.
  • Competitive exclusion and resource partitioning. Two species cannot share exactly the same limiting resources indefinitely (Gause's principle). Coexisting plants partition them (niche partitioning): shade-tolerant species in the understory, deep-rooted species tapping groundwater while shallow roots take rain, and species that grow in different seasons. David Tilman's resource-ratio (R*) theory predicts that, for a single limiting resource, the species able to draw that resource down to the lowest level (lowest R*) wins.
  • Allelopathy. Some plants release chemicals (allelochemicals, secondary metabolites) that suppress the germination or growth of neighbors. Black walnut's juglone is the standard example, so gardens near black walnuts struggle (tomatoes are especially sensitive). Others: sunflowers, eucalyptus, tree of heaven, garlic mustard, spotted knapweed, sorghum and rye (whose residues are used as weed-suppressing cover crops in sustainable agriculture).
  • Life-history strategies. Fast-growing, short-lived colonizers with high seed output (many annual weeds; ruderals or r-selected species) do well after disturbance; slow-growing, long-lived competitors take over as resources become scarce; stress-tolerators persist where resources are always scarce (Grime's competitor, stress-tolerator and ruderal triangle).
  • Succession. Primary succession starts on bare rock or new lava with no soil; lichens (and mosses) are the classic pioneer species, breaking down rock and adding organic matter. Secondary succession follows a disturbance that leaves soil and seed bank intact (fire, an abandoned field, a clear-cut) and proceeds faster, typically annual weeds → perennials and grasses → shrubs → trees, ending in a relatively stable climax community until the next disturbance. After a disturbance, succession does not always rebuild the original community: the new climax can differ in composition if soils, seed sources, climate or invasive species have changed. Diversity usually rises quickly in early succession and then levels off or even declines (the rate of change decelerates) as dominant competitors take over. Connell and Slatyer (1977) described three ways early species affect later ones: facilitation (they make the site better, as nitrogen-fixing alders do for spruce after glaciers retreat), tolerance (later species are simply better competitors under low resources) and inhibition (early species hold the site until they die or are disturbed).
  • Fire. In fire-adapted ecosystems (chaparral, prairies, longleaf pine savanna) fire recycles nutrients, clears competitors and triggers seeds. Chaparral recovers by secondary succession: shrubs resprout from root crowns and burls (lignotubers, woody swellings at the base packed with dormant buds) and fire-cued seeds germinate, with grasses and annual herbs first. Wildfires are classed as ground fires (smoldering through peat and deep organic soil), surface fires (burning litter, grasses and shrubs; the type most fire-adapted forests are built to survive) and crown fires (racing through the treetops, the most destructive). Prescribed (controlled) burns reduce fuel buildup and maintain these communities; decades of fire suppression let dead fuel accumulate, which feeds catastrophic wildfires and favors some pathogens.

Plant-animal and plant-microbe interactions

InteractionEffectExamples
Mutualism (+/+)Both benefitPollinators; seed-dispersing animals; mycorrhizae; rhizobia; ants that guard acacias in exchange for shelter and food
Herbivory (+/−)Animal eats plantGrazers, leaf-chewing insects (defoliators), sap-suckers (aphids), borers (tunneling in stems and wood), leaf miners (tunneling between leaf surfaces), root feeders, seed predators; voles and gophers eat roots, tubers and bulbs underground
Parasitism (+/−)One plant lives on anotherHoloparasites with little or no chlorophyll (dodder, Cuscuta, a stem parasite; broomrape; Rafflesia) and hemiparasites that still photosynthesize but steal water and minerals (mistletoe, Indian paintbrush); both tap the host with haustoria
Commensalism (+/0)One benefits, the other is unaffectedEpiphytes such as orchids, bromeliads and Spanish moss perched on trees
LichenMutualism of a fungus with a green alga or a cyanobacteriumPioneers on rock; indicators of air quality

Mycorrhizae ("fungus roots") are found in roughly 80 to 90% of land plant species. Arbuscular mycorrhizae (endomycorrhizae, also called vesicular-arbuscular mycorrhizae or VAM, after the arbuscules and the storage vesicles many form inside roots; fungi of the Glomeromycota) push branched arbuscules inside root cortex cells and are the most common type, including most crops; they cannot complete their life cycle without a host (obligate symbionts). Ectomycorrhizae wrap roots in a fungal sheath and grow between cortex cells (the Hartig net) on pines, oaks, birches and beeches. Orchids and heaths have their own types. The fungus extends the root's reach for phosphorus, water and other nutrients in exchange for up to about a fifth of the plant's sugar, and mycorrhizae helped the first plants colonize land.

Plant defenses against herbivores are physical (thorns, spines, prickles, trichomes, tough leaves, silica in grasses, waxes) and chemical (secondary metabolites: alkaloids such as nicotine, caffeine and solanine, benzoxazinoids such as DIMBOA in young corn, wheat and rye, which deter insects and fungi, tannins that bind proteins and make tissue hard to digest, terpenoids, cyanogenic glycosides, glucosinolates in mustards, latex). Many defenses are induced: chewing triggers jasmonate signaling, protease inhibitors and volatile compounds that attract predators and parasitoid wasps of the herbivore. Plants put the most defense into their most valuable and vulnerable tissues: tannins are concentrated in oak acorns, and caffeine in coffee and tea leaves and seeds acts as a natural insecticide. Even nectar can carry small doses of alkaloids such as nicotine and caffeine, which deter nectar robbers and, in caffeine's case, help bees remember the flower. Specialist herbivores turn defenses into an advantage: monarch caterpillars feed only on milkweed and store its toxic cardiac glycosides, which protect them from birds.

Adaptations to environment

TypeEnvironmentTypical features
XerophytesDryThick cuticle; sunken stomata in pits or grooves; dense hairs; small, light-colored, rolled or needle-like leaves, or leaves reduced to spines with photosynthesis moved to green stems; succulent water storage; CAM; deep taproots or wide, shallow roots; dropping leaves in drought; desert annuals that complete their life cycle in a few wet weeks
HydrophytesAquaticAerenchyma (large air spaces, so much parenchyma) for buoyancy and oxygen; little lignin or support tissue; reduced roots and xylem; thin or no cuticle; floating leaves with stomata on the upper surface only; finely divided submerged leaves
HalophytesSalty soil (salt marshes, mangroves)Salt glands that excrete salt (smooth cordgrass, Spartina), succulence that dilutes salt, salt-excluding roots, high internal solute levels to keep water potential below the soil's; mangroves add pneumatophores and seedlings that sprout on the parent
EpiphytesOn other plants (not parasitic)Aerial roots with a spongy velamen, water-storing tissues, water-holding leaf tanks (orchids, bromeliads); CAM in many
Carnivorous plantsNutrient-poor bogsTraps that digest insects for nitrogen and phosphorus
Tundra and alpine plantsCold, windy, short season, permafrostLow, cushion or mat growth near the warmer ground, small leathery or hairy leaves, dark pigments, perennial life cycles, shallow roots above permafrost, rapid flowering, often vegetative reproduction; arctic willow, Labrador tea, cotton grass, mosses and reindeer lichen
Shade (understory) plantsLow lightBroad, thin leaves; more chlorophyll b; low compensation points (shade plants are sciophytes; sun-loving plants are heliophytes)
Temperate deciduous treesCold wintersDrop leaves to avoid winter water loss and freezing; dormant buds protected by bud scales
Conifers of cold, dry climatesTaigaNeedle leaves with thick cuticle and sunken stomata, conical shape that sheds snow, evergreen leaves ready to photosynthesize in spring
Rainforest plantsHot, wet, dim understory, poor soilButtress and stilt (prop) roots and other adventitious roots for support in shallow soil; thin, smooth bark (no need for insulation against cold or fire, and it sheds climbing epiphytes); waxy leaves with drip tips that shed rain and discourage fungi and epiphylls; lianas and epiphytes climbing toward light; large leaves in the understory; many canopy epiphytes (orchids, bromeliads) use CAM because the canopy dries quickly

Carnivorous plants trap prey five ways: pitfall traps (pitcher plants, Sarracenia and Nepenthes), snap traps (Venus flytrap, Dionaea, closing when trigger hairs are touched twice), flypaper traps of sticky glandular hairs (sundews, Drosera; butterworts), suction bladders (bladderworts, Utricularia) and lobster-pot traps (Genlisea). They still photosynthesize; insects supply nutrients, not energy.

Raunkiær's life forms classify plants by where their renewal buds survive the unfavorable season: phanerophytes (buds well above ground: trees and shrubs, dominant in the tropics), chamaephytes (buds just above the soil, under snow: low shrubs, cushion plants), hemicryptophytes (buds at the soil surface: many grassland perennials), cryptophytes or geophytes (buds underground on bulbs, rhizomes and tubers, or under water) and therophytes (survive only as seeds: annuals, dominant in deserts). The harsher the climate, the better protected the buds.

Desert flora to know: cacti (Cactaceae, recognized by areoles), agaves and yuccas, creosote bush and puncturevine (Zygophyllaceae), mesquite (Fabaceae), ocotillo and Welwitschia. Famous aquatic plants: eelgrass (Zostera marina), the main seagrass of Chesapeake Bay and a nursery for blue crabs, is a flowering plant (a monocot), not an alga; seagrass meadows such as those of Posidonia oceanica in the Mediterranean are clonal and are estimated to be many thousands of years old, among the oldest living organisms. Periphyton is the community of algae, cyanobacteria and microbes attached to submerged surfaces (rocks, plants) in streams, lakes and wetlands.

Not every non-native plant is invasive (most garden plants never escape). Invasive species are non-native species that spread from where they were introduced and harm ecosystems, economies or health. They typically grow fast, reproduce heavily or vegetatively, tolerate many conditions and arrived without their natural enemies, so they outcompete natives, alter food webs and habitats and reduce biodiversity. Plant examples: Chinese wisteria (brought from Asia in the 1800s as a porch vine), kudzu, purple loosestrife, Japanese knotweed, garlic mustard, English ivy, tree of heaven, water hyacinth (Eichhornia crassipes), hydrilla, Japanese honeysuckle, multiflora rose, buckthorn, Callery (Bradford) pear, cheatgrass (which fuels more frequent fires) and, in some regions, butterfly bush. Homeowners should remove invasive plants and dispose of them so seeds and fragments cannot spread (bagging, not composting); land managers add biological control, such as leaf beetles released against purple loosestrife. Native species such as red maple are not invasive in their native range.

Plants, food and people

Use of plant materials by animals and humans

Most animals cannot make enzymes that break down cellulose, the most abundant organic compound on land. Herbivores rely on microbes: ruminants (cows, sheep, deer) ferment plants in the rumen and rechew the cud; hindgut fermenters (horses, rabbits) ferment in the cecum and colon; termites carry gut symbionts (and also make some cellulase of their own). Some herbivores specialize on one plant despite its toxins: koalas eat almost nothing but eucalyptus leaves, and giant pandas eat bamboo. Humans get almost no energy from cellulose; to us it is dietary fiber.

People use plants for food, fiber, wood and paper, fuel, rubber, cork, dyes, beverages, spices and medicines. Plants give us structural materials because their cell walls are built of cellulose and lignin.

Fibers come from four places, and all are mostly cellulose:

Fiber typePlant tissueExamples
Seed (surface) fibersHairs growing from the seed coatCotton, the world's leading natural textile fiber; kapok
Bast (soft) fibersPhloem fibers (sclerenchyma) of the stemFlax (linen), hemp, jute (burlap), ramie, kenaf
Leaf (hard) fibersFiber bundles running through leavesSisal, abacá (Manila hemp), New Zealand flax
Fruit fibersHuskCoir from coconut

Bast fibers are freed by retting: soaking or dew-wetting the stems so microbes rot away the pectin that glues fibers to the surrounding tissue (flax, hemp, jute, kenaf, ramie). U.S. paper money is not paper from wood pulp but a blend of about 75% cotton and 25% linen.

Wood is secondary xylem. Hardwood comes from angiosperm trees (oak, maple, walnut) and contains vessels and fibers; softwood comes from conifers (pine, spruce, fir) and is mostly tracheids. Paper is made from cellulose fibers of wood pulp after most of the lignin is removed. Wood's specific gravity is its density divided by the density of water (oven-dry mass divided by the mass of an equal volume of water); denser wood is generally stronger in tension and compression, and wood's specific gravity rises as it dries and shrinks. Tannins from oak and other barks are used to tan animal hides into leather. Other plant products: rubber from the latex of Hevea brasiliensis, cork from the cork cambium of the cork oak, turpentine and rosin from pine resin, dyes such as indigo and henna, and biofuels: ethanol fermented from corn and sugarcane, biodiesel made from the oils of soybean, rapeseed (canola), oil palm and the shrub Jatropha curcas, and cellulosic ethanol from grasses such as switchgrass.

Spices, beverages and flavorings come from every plant organ:

ProductPlant partPlant
CinnamonInner barkCinnamomum
ClovesDried flower budsClove tree
SaffronStigmasSaffron crocus (the most expensive spice by weight)
VanillaCured fruit (pod)Vanilla, a climbing orchid
Black pepperDried fruitPiper nigrum
Nutmeg and maceSeed and the red aril around itNutmeg tree
Ginger, turmericRhizomeGinger family
CapersFlower budsCaper bush
Coffee, cacao (chocolate)SeedsCoffea; Theobroma cacao
TeaLeavesCamellia sinensis
Mint, basil, oreganoLeavesMint family

Production of foodstuffs and plant products

A handful of grasses feed the world: rice, wheat and maize supply a large share of human food energy (often quoted at around half). Other staples include potatoes, cassava, soybeans, sorghum and millets. Soybeans are the richest pulse in protein (roughly 35 to 40% of dry weight, versus about 20 to 27% for peas, beans, lentils, black gram and pigeon pea) and also yield oil, which is why they are the world's leading oilseed and a major feed crop. Crops were domesticated independently in several centers of origin (Vavilov's idea): the Fertile Crescent of the Middle East (wheat, barley, peas, lentils, about 10,000 years ago), China (rice, soybeans), Mesoamerica (maize from the wild grass teosinte, beans, squash, chili peppers, cacao), the Andes (potatoes, quinoa), Africa (sorghum, coffee from Ethiopia) and New Guinea and Southeast Asia (sugarcane, bananas). Domestication is artificial selection: people, not nature, chose which plants reproduced, unlike natural selection, which favors whatever survives and reproduces best in the wild. Domestication selected for seeds that do not shatter off the plant, larger fruits and seeds, and seeds that germinate together without dormancy. In the United States, California grows far more fruits, nuts and vegetables than any other state (most of the nation's almonds, grapes, lettuce, tomatoes for processing, strawberries and broccoli), Florida grows much of the winter fresh-vegetable supply and, with California, most of the oranges (citrus greening has sharply cut Florida's crop), the Corn Belt (Iowa, Illinois, Nebraska) leads corn and soybeans, Kansas and North Dakota lead wheat, Idaho leads potatoes, Washington leads apples, Texas leads cotton and Georgia leads peanuts. Shifting cultivation (slash-and-burn, swidden) clears and burns a forest patch, farms it for a few years until fertility drops and weeds build up, then moves to new land and lets the old plot regrow.

ProductPlant part
Wheat flour, rice, corn, oatsGrain (a one-seeded fruit, the caryopsis, made mostly of seed; flour is mostly endosperm)
Beans, peas, lentils, peanutsSeeds (legumes)
SugarStem (sugarcane) or storage root (sugar beet)
PotatoStem tuber
Sweet potato, cassava, carrot, beetStorage roots
Onion, garlicBulb (fleshy leaf bases)
GingerRhizome
Asparagus, kohlrabiStems
Celery, rhubarbPetioles (leaf stalks)
Lettuce, spinach, kaleLeaves
Cabbage (the largest edible bud), Brussels sprouts (axillary buds)Buds
Broccoli, cauliflower, artichokeFlower buds and inflorescences
Tomato, squash, pepper, eggplant, cucumberFruits
Vegetable oilsSeeds (soybean, canola, sunflower, cotton) or fruit (olive, oil palm, avocado)
Coffee, cacaoSeeds
TeaLeaves
CinnamonBark

The Netherlands dominates the world cut-flower trade (roughly half of global exports, much of it through its flower auctions), followed by growers in Colombia, Ecuador and Kenya. Converting raw produce into canned, frozen, dried or milled products is called processing, and buying locally grown food mainly cuts the fuel used to transport it. Milled white rice is a poor source of vitamins (the bran and germ that carry B vitamins are removed, and rice grains have no vitamin A at all), one reason vitamin-fortified rice and beta-carotene-rich Golden Rice were developed. Processing turns raw crops into foods: milling separates bran and germ from the endosperm (white flour); fermentation by yeast makes bread rise and turns sugars into alcohol; malting lets germinating barley convert its starch to sugar (gibberellin triggers the enzymes); bacteria ferment cabbage into sauerkraut. Food safety includes plant toxins: potatoes exposed to light turn green (chlorophyll) and at the same time build up the bitter glycoalkaloid solanine, concentrated in green skin and sprouts, so green or sprouting parts should be cut away or the potato discarded. Solanine and related alkaloids occur across the nightshade family (potatoes, tomatoes, eggplants), not in onions. Soybeans become soy milk (soaked, ground and strained beans), tofu (soy milk curdled with a calcium or magnesium salt and pressed), tempeh (whole soybeans fermented by a Rhizopus mold), miso and soy sauce (fermented with Aspergillus mold) and edamame (immature green pods). Corn is most sensitive to drought at tasseling and silking (pollination), then during grain fill; water stress then cuts kernel number and yield far more than stress during vegetative growth.

The Green Revolution (1950s-1970s) raised yields with semi-dwarf wheat and rice, synthetic fertilizer, irrigation and pesticides, led by Norman Borlaug in Mexico and spreading to India and Pakistan. The dwarfing genes alter gibberellin production or response, giving short, sturdy stems that hold heavy heads of grain without falling over (lodging). It averted famines and kept food prices low, but it also increased fertilizer runoff and pesticide use, depleted groundwater, encouraged monocultures of a few varieties (more, not less, monoculture), displaced traditional landraces, and favored farmers who could afford the inputs. The Haber-Bosch process that supplies its nitrogen fertilizer is a major source of nitrogen pollution. Water limits agriculture in dry regions such as California, where water-hungry tree crops like almonds and pistachios are under scrutiny.

Crops and garden plants A to Z

Use this table to answer the "which part do we eat", "how is it propagated", "cool or warm season" and "what is its signature disease" questions that make up much of a horticulture or human-uses section. Each row is one crop or garden plant, sorted alphabetically by common name, so you can scan a single column (for example every stem tuber, every dioecious crop or every CAM plant) to catch a whole category at once. Fruit and organ names follow the Fruits and seeds and the Roots, stems and leaves sections of this guide.

ReferenceCrops and garden plants A-Z· 229 rows

"Grown as annual" means botanically biennial or perennial but harvested in one season. SD, LD, DN = short-day, long-day, day-neutral. C3, C4, CAM = photosynthetic pathway (noted only where tests ask). "Chilling" = hours near 32 to 45 °F needed to break bud dormancy. "Pollinizer" = a second, compatible cultivar planted for cross-pollination.

229 rows
Plant (scientific name)FamilyHabit and life cyclePart used (botanical term)PropagationSeason and cultureMain pests and diseasesNotes
African violet (Saintpaulia ionantha, now Streptocarpus)GesneriaceaeHerbaceous rosette; perennial houseplantOrnamental (flowers, foliage)Leaf-petiole cuttings; division; seedBright indirect light; room-temperature water (cold water spots leaves); water from belowMealybugs; cyclamen mites; crown and root rotNative to Tanzania and Kenya; fuzzy leaves
Agave, blue (Agave tequilana)AsparagaceaeSucculent rosette, monocot; monocarpic perennial"Piña" (stem core with leaf bases), roasted for tequilaOffsets (hijuelos), so fields are clonalHot, dry; about 6 to 8 years (range 5 to 12) to maturity before harvestAgave snout weevil; FusariumCAM; bat-pollinated if allowed to flower; low genetic diversity from clonal planting; stores fructans (agavins), which are hydrolyzed to make fructose-rich agave syrup
Alfalfa (Medicago sativa)FabaceaeHerbaceous perennial with deep taprootForage (leaves and stems, hay)Seed (inoculated with Sinorhizobium meliloti)Cool-season; needs pH about 6.5 or higher and good drainage; cut several times a yearAlfalfa weevil; potato leafhopper; root rotsN-fixing legume; "queen of forages"; C3
Almond (Prunus dulcis)RosaceaeDeciduous tree; perennialSeed of a drupe (hull = dried exocarp and mesocarp; shell = endocarp)Budded onto peach or peach-almond hybrid rootstockMediterranean climate; blooms very early (frost risk); most cultivars self-incompatible, need pollinizer rows and honeybeesNavel orangeworm; hull rot; brown rotCalifornia grows about 80% of world supply; bitter almonds contain amygdalin (cyanogenic)
Aloe (Aloe vera)AsphodelaceaeSucculent monocot rosette; perennialLeaf gel (water-storage parenchyma)Offsets (pups)Full sun to bright light; frost-tender; let soil dryRoot rot from overwatering; mealybugsCAM; latex under the leaf skin is a laxative (aloin)
Amaryllis (Hippeastrum hybrids)AmaryllidaceaeMonocot bulb; perennialOrnamental (flowers)Offset bulbs; seed; bulb cutting (twin-scaling)Forced indoors for winter bloom; outdoors only about zones 8 to 10Red blotch (Stagonospora); bulb mites; narcissus bulb flySouth American; true Amaryllis belladonna is South African; bulbs toxic
Apple (Malus domestica)RosaceaeDeciduous tree; perennialFruit (pome; flesh is hypanthium)Budding or grafting onto clonal rootstocks (Malling 'M.9' dwarfing, 'M.7', 'MM.111'); seeds do not come trueTemperate, about zones 3 to 8; needs chilling; most need a pollinizer (another cultivar or crabapple) and bees; harvest late summer to fallCodling moth; apple scab (Venturia inaequalis); fire blight (Erwinia amylovora); cedar-apple rustClimacteric; origin Central Asia (wild Malus sieversii, Kazakhstan); Washington leads U.S.
Apricot (Prunus armeniaca)RosaceaeDeciduous tree; perennialFruit (drupe)Budded onto apricot, peach or plum rootstockBlooms very early, so late frosts kill crops; most cultivars self-fruitfulBrown rot; bacterial canker; plum curculioOrigin Central Asia and China
Artichoke, globe (Cynara cardunculus var. scolymus)AsteraceaeHerbaceous perennial (some grown as annual)Immature inflorescence (head): fleshy bract bases and receptacle ("heart")Rooted offshoots, division; seed for annual typesMild, cool, foggy coast (Castroville, California); hardy only in mild wintersAphids; slugs and snails; artichoke plume mothThistle relative; Mediterranean origin; the "choke" is immature florets
Arugula (Eruca vesicaria)BrassicaceaeHerbaceous; cool-season annualLeavesSeed, direct-sownCool; bolts in heat and long daysFlea beetlesPeppery from glucosinolates; Mediterranean
Ash (Fraxinus americana, F. pennsylvanica)OleaceaeDeciduous tree; perennialTimber (bats, tool handles); shade treeSeedFull sun; widely planted street treeEmerald ash borer (Agrilus planipennis, found in Michigan 2002)Opposite pinnately compound leaves; single samaras; mostly dioecious
Asparagus (Asparagus officinalis)AsparagaceaeHerbaceous perennial monocotYoung shoots (spears = stems); the ferny "leaves" are cladophyllsOne-year crowns set in trenches; seedCool-season perennial; harvest spring starting the 2nd or 3rd year for 6 to 8 weeks; tolerates salt; pH about 6.5 to 7.5Asparagus beetle; Fusarium crown rot; asparagus rustDioecious; all-male hybrids (Jersey series) yield more; beds last 15 to 20+ years
Avocado (Persea americana)LauraceaeEvergreen tree; perennialFruit (one-seeded berry)Grafted onto seedling or clonal rootstocks (chosen for Phytophthora tolerance)Subtropical, frost-tender; perfect drainage; flowers type A or B (each opens female, then male, at different times), so A and B cultivars interplantedPhytophthora cinnamomi root rot; thripsClimacteric; ripens only after picking; 'Hass' is type A; origin Mexico and Central America; persin toxic to birds and livestock
Azalea and rhododendron (Rhododendron spp.)EricaceaeWoody shrub (evergreen or deciduous); perennialOrnamental (flowers)Cuttings; layeringAcid soil (pH about 4.5 to 6); part shade; shallow roots, mulch; iron chlorosis in alkaline soilPhytophthora root rot; azalea lace bug; leaf gall (Exobasidium)Toxic (grayanotoxins; "mad honey"); ericoid mycorrhizae
Bamboo (Phyllostachys, Bambusa and others)PoaceaeWoody grass; perennialCulms (stems) for building; young shoots eatenRhizome divisionRunning types (leptomorph rhizomes) spread aggressively; clumping types (pachymorph) do notBamboo mites; few serious pestsAmong the fastest-growing plants; many species flower all at once at long intervals, then die (monocarpic)
Banana (Musa acuminata × M. balbisiana cultivars)MusaceaeGiant herb (pseudostem of rolled leaf sheaths); perennial monocotFruit (berry), parthenocarpicSuckers (pups) from the underground rhizome (corm); tissue cultureTropical, frost-free; rich moist soil; each pseudostem fruits oncePanama disease (Fusarium wilt, TR4); black Sigatoka; banana bunchy top virusSeedless sterile triploids ('Cavendish', AAA); 'Gros Michel' was lost to Panama disease; origin Southeast Asia; not a tree
Barberry, common (Berberis vulgaris)BerberidaceaeDeciduous spiny shrub; perennialOrnamental, hedgesSeed; cuttingsHardy; sun to part shadeAlternate host of wheat stem rustU.S. eradication campaign from 1918 to break the stem rust cycle; spines are modified leaves; Japanese barberry (B. thunbergii) is an invasive escape
Barley (Hordeum vulgare)PoaceaeGrass; cool-season annual (winter and spring types)Grain (caryopsis, usually hulled)Seed (drilled)Cool, dry; most salt- and drought-tolerant small grain; short seasonPowdery mildew; barley yellow dwarf virus (aphids); Fusarium head blightC3; LD; self-pollinated; malting (germinated grain makes amylases) for beer; Fertile Crescent founder crop
Basil (Ocimum basilicum)LamiaceaeHerbaceous; warm-season annualLeavesSeed; stem cuttings root readily in waterFrost-tender; full sun, warm soil; pinch flowers to keep leafyBasil downy mildew (Peronospora belbahrii); Fusarium wiltSquare stems, opposite aromatic leaves; origin India
Bean, common (snap, dry) (Phaseolus vulgaris)FabaceaeHerbaceous; warm-season annual, bush or pole (twining vine)Immature pods (legume) for snap beans; seeds for dry beans (kidney, pinto, navy, black)Seed, direct-sown about 1 in. deep after frost in soil 60 °F or warmerFrost-tender; full sun (6 to 8+ hr); self-pollinating; pick snap beans youngMexican bean beetle; bean common mosaic virus; anthracnose; white moldEpigeal germination; N-fixing (Rhizobium); one of the Three Sisters; raw kidney beans contain toxic lectin (phytohaemagglutinin); origin Mesoamerica and Andes
Beet (Beta vulgaris, Conditiva group)AmaranthaceaeHerbaceous; biennial grown as cool-season annualStorage root (swollen taproot plus hypocotyl); leaves (greens)Seed; each "seed" is a fruit cluster holding several seeds, so thin seedlingsCool-season, frost-tolerant; spring or fallCercospora leaf spot; leaf miners; boron deficiency (internal black spot)Red betalain pigments (betanin), not anthocyanins; rings from extra cambia; chard and sugar beet are the same species
Begonia (Begonia spp.)BegoniaceaeHerbaceous perennial (wax begonia grown as annual; tuberous and rex types)Ornamental (flowers, foliage)Stem cuttings; leaf cuttings (rex); tubers; dust-fine seedShade to part shade; frost-tenderPowdery mildew; botrytis; root rotMonoecious, separate male and female flowers on one plant
Bermudagrass (Cynodon dactylon)PoaceaeTurf grass; warm-season perennialLeaves (lawn, sports turf, forage)Sprigs, plugs and sod (stolons and rhizomes); seed for common typesFull sun only; drought-tolerant; goes brown and dormant after frostSpring dead spot; armyworms; mole cricketsC4; aggressive garden weed; origin Africa
Black pepper (Piper nigrum)PiperaceaeWoody climbing vine; perennialFruit (small drupe, "peppercorn")Stem cuttingsHumid tropics; needs support posts or trees and partial shadePhytophthora foot rot ("quick wilt")Black = unripe fruit dried; white = ripe fruit with pericarp removed; piperine; origin Western Ghats, India
Blackberry (Rubus spp.)RosaceaeWoody perennial crown with biennial canes (primocane, floricane)Aggregate fruit of drupelets; core (receptacle) comes off with the fruitTip layering; root cuttings; suckersSelf-fruitful; full sun; trellis trailing types; remove floricanes after they fruitOrange rust; anthracnose; spotted wing drosophilaRaspberry differs: its fruit pulls off the receptacle, leaving a hollow
Black-eyed Susan (Rudbeckia hirta)AsteraceaeHerbaceous; biennial or short-lived perennialOrnamental (flower heads)Seed (self-sows); divisionFull sun; drought-tolerant; summer to fall bloomPowdery mildew; Septoria leaf spotNative prairie wildflower; Maryland state flower; head of yellow ray florets and dark disk florets
Blueberry, highbush (Vaccinium corymbosum)EricaceaeDeciduous woody shrub; perennialFruit (berry from an inferior ovary)Softwood or hardwood cuttings; tissue cultureAcid soil pH about 4.5 to 5.5, high organic matter; needs chilling (rabbiteye and southern highbush need less); plant 2+ cultivars for better set; bee (buzz) pollination; harvest midsummerMummy berry; spotted wing drosophila; birds; iron chlorosis in high-pH soilNative to North America; ericoid mycorrhizae, few root hairs; ripening is atypical climacteric (classification debated)
Bluebonnet, Texas (Lupinus texensis)FabaceaeHerbaceous; winter annualOrnamental (wildflower)Seed (hard coat, scarify)Fall-sown, blooms in spring; full sun, well-drained, alkaline-tolerantRoot rot in wet soilTexas state flower; N-fixing legume; seeds toxic
Boston fern (Nephrolepis exaltata 'Bostoniensis')NephrolepidaceaeFern; perennial houseplantOrnamental (fronds)Division; plantlets on runners (stolons); no seeds (spores, but the cultivar is propagated vegetatively)Bright indirect light; high humidity; keep evenly moistMealybugs; scale; leaf drop in dry airNon-flowering vascular plant
Boxwood (Buxus sempervirens and others)BuxaceaeEvergreen shrub; perennialOrnamental (hedges, topiary)CuttingsSun to part shade; well-drained soilBoxwood blight (Calonectria pseudonaviculata); boxwood leafminerToxic alkaloids, so deer-resistant
Brazil nut (Bertholletia excelsa)LecythidaceaeGiant emergent rainforest tree; perennialSeed (10 to 25 in a woody capsule)Seed; mostly wild-harvestedAmazon rainforest; plantations yield poorlyFew pestsPollinated by large bees (euglossine and others); agoutis gnaw open the pods and disperse seeds; Bolivia is the top exporter; seeds high in selenium
Broccoli (Brassica oleracea, Italica group)BrassicaceaeHerbaceous; biennial species grown as cool-season annualImmature inflorescence (flower buds and stalks)Seed; transplantsCool-season, frost-tolerant; harvest before yellow petals show; side shoots follow the main headImported cabbageworm; cabbage looper; aphids; clubroot (Plasmodiophora brassicae)Boron deficiency causes hollow stem; cabbage, kale, collards, kohlrabi, cauliflower and Brussels sprouts are all B. oleracea (wild cabbage, Mediterranean)
Brussels sprouts (Brassica oleracea, Gemmifera group)BrassicaceaeHerbaceous; biennial grown as annualEnlarged axillary budsSeed; transplantsLong, cool season; flavor improves after frost; harvest from the bottom upCabbageworms; aphids; clubrootGlucosinolates give the bitterness
Buckwheat (Fagopyrum esculentum)PolygonaceaeHerbaceous; warm-season annualFruit (achene, triangular), milled as a pseudocerealSeedShort season (about 10 to 12 weeks); frost-tender; grows on poor soilFew pestsNot a grass; gluten-free; smother cover crop and bee plant; heterostylous (pin and thrum flowers) so insects needed
Cabbage (Brassica oleracea, Capitata group)BrassicaceaeHerbaceous; biennial grown as cool-season annualHead = large terminal bud of overlapping leavesSeed; transplantsCool-season, frost-tolerant; heads split after heavy water uptake; needs vernalization to flowerImported cabbageworm; cabbage looper; black rot (Xanthomonas campestris); clubrootSauerkraut and kimchi (Napa cabbage is B. rapa)
Cacao (Theobroma cacao)MalvaceaeEvergreen understory tree; perennialSeeds ("beans") from a large pod; fermented, dried, roastedSeed; grafting; cuttingsHumid tropics within about 20° of the equator; shade; flowers borne on trunk (cauliflory)Black pod (Phytophthora); witches' broom; frosty pod; cocoa swollen shoot virusPollinated by tiny midges; theobromine and caffeine; origin upper Amazon; Ivory Coast is the top producer
Calla lily (Zantedeschia aethiopica)AraceaeHerbaceous monocot; perennial from a rhizomeOrnamental (cut flower)Division of rhizomesTender (outdoors about zones 8 to 10); moist soilBacterial soft rot (Pectobacterium); aphidsWhite "flower" is a spathe around a spadix; not a true lily; calcium oxalate, toxic; South Africa
Camellia (Camellia japonica, C. sasanqua)TheaceaeEvergreen shrub; perennialOrnamental (flowers in fall to spring)Cuttings; grafting; layeringAcid soil; part shade; mild wintersTea scale; camellia petal blightSame genus as tea
Canna (Canna × generalis)CannaceaeHerbaceous monocot; perennial from a rhizomeOrnamental (flowers, foliage)Division of rhizomesHot sun, moist soil; tender, dig rhizomes in the NorthCanna leaf roller; canna rust; canna virusesShowy "petals" are petaloid staminodes; hard round seeds ("Indian shot")
Canola (rapeseed) (Brassica napus)BrassicaceaeHerbaceous; cool-season annual (winter and spring types)Seeds (from a silique), pressed for oilSeedCool, temperate; Canada a top producerFlea beetles; blackleg; Sclerotinia stem rot"Canola" = rapeseed bred in Canada (1970s) for low erucic acid and low glucosinolates; most North American canola is herbicide-tolerant (largely GM); B. napus is the amphidiploid of B. rapa × B. oleracea (triangle of U)
Cantaloupe (muskmelon) (Cucumis melo)CucurbitaceaeHerbaceous vine; warm-season annualFruit (pepo)Seed or transplants after frostWarm, full sun; bees needed; harvest at "full slip" (stem separates easily)Cucumber beetles (bacterial wilt); powdery mildew; aphidsSugar does not rise after harvest; U.S. "cantaloupe" is netted muskmelon (var. reticulatus); origin Africa or Asia
Cardamom (Elettaria cardamomum)ZingiberaceaeHerbaceous monocot; perennial from a rhizomeSeeds in a dried capsuleRhizome division; seedShaded humid tropical forestThrips; viral and rot diseasesAmong the costliest spices (after saffron and vanilla); native to the Western Ghats of India; Guatemala and India are the top producers (Guatemala leads exports)
Carnation (Dianthus caryophyllus)CaryophyllaceaeHerbaceous perennialOrnamental (cut flower)Stem cuttingsCool, bright greenhouses; full sunFusarium wilt; thrips; aphidsVery sensitive to ethylene ("sleepiness"); long vase life; Colombia supplies most U.S. imports
Carrot (Daucus carota subsp. sativus)ApiaceaeHerbaceous; biennial grown as cool-season annualStorage taproot (mostly secondary phloem and xylem)Seed only, direct-sown (slow to germinate; do not transplant)Cool-season, frost-tolerant; deep, loose, stone-free soil (rocks and clods cause forking); hill to prevent green shouldersCarrot rust fly; aster yellows (phytoplasma, leafhoppers); Alternaria leaf blightOrange beta-carotene types developed in the Netherlands about the 1600s; wild form is Queen Anne's lace; fruit a schizocarp; needs vernalization to flower
Cashew (Anacardium occidentale)AnacardiaceaeEvergreen tropical tree; perennialSeed inside the kidney-shaped nut (drupe), which hangs below the swollen pedicel (cashew apple, an accessory fruit)Seed; graftingTropical lowlands; drought-tolerantTea mosquito bug; anthracnoseShell oil (anacardic acid, cardol) is caustic like poison ivy, so cashews are never sold in the shell; origin northeastern Brazil
Cassava (Manihot esculenta)EuphorbiaceaeWoody shrub; perennial grown as annualStorage (tuberous) rootsStem cuttingsTropical; tolerates drought and poor, acid soils; harvest 8 to 24 monthsCassava mosaic disease (whiteflies); cassava brown streakCyanogenic glucosides (linamarin) must be removed by soaking, grating, cooking; tapioca; staple for hundreds of millions; origin Amazon basin, Brazil
Castor bean (Ricinus communis)EuphorbiaceaeShrub or small tree; perennial, grown as warm-season annual ornamentalSeed (castor oil, ricinoleic acid)SeedHot sun; frost-tenderFew pestsSeed contains ricin, one of the most toxic plant proteins (the refined oil is safe); seed has a caruncle; albuminous seed; monoecious; origin East Africa
Cauliflower (Brassica oleracea, Botrytis group)BrassicaceaeHerbaceous; biennial grown as cool-season annual"Curd" = proliferated inflorescence meristems (immature flower stalks)Seed; transplantsCool, steady conditions; blanch by tying leaves over the curd; stress causes "buttoning"Cabbageworms; clubroot; boron deficiency (brown curd, hollow stem)Molybdenum deficiency causes whiptail
Celery (Apium graveolens var. dulce)ApiaceaeHerbaceous; biennial grown as annualPetioles (leaf stalks; collenchyma "strings")Seed (tiny, slow, needs light); transplantsLong, cool season; heavy water and fertility; blanching; long cold spells cause boltingEarly and late blights (Cercospora, Septoria); aster yellowsCalcium deficiency causes blackheart; boron deficiency cracked stem; psoralens can cause skin photosensitivity
Chard, Swiss (Beta vulgaris, Cicla group)AmaranthaceaeHerbaceous; biennial grown as annualLeaves and thick petiolesSeed (seed clusters, thin seedlings)Cool-season but heat-tolerant; cut-and-come-againLeaf miners; Cercospora leaf spotSame species as beet and sugar beet
Cherry, sour (tart) (Prunus cerasus)RosaceaeDeciduous tree; perennialFruit (drupe)Budded onto Mahaleb or Mazzard rootstockHardy; needs chilling; self-fruitful ('Montmorency')Cherry leaf spot (Blumeriella jaapii); brown rot; cherry fruit flyMichigan leads U.S. production
Cherry, sweet (Prunus avium)RosaceaeDeciduous tree; perennialFruit (drupe)Budded onto Mazzard, Mahaleb or dwarfing 'Gisela' rootstocksNeeds chilling; most need a pollinizer ('Stella', 'Lapins' self-fruitful); rain at ripening cracks fruitBacterial canker; brown rot; spotted wing drosophila; birds'Bing'; Washington leads U.S. production; non-climacteric
Chestnut (Castanea dentata, American; C. mollissima, Chinese)FagaceaeDeciduous tree; perennialNut in a spiny bur (cupule)Seed; graftingAcid, well-drained soil; needs cross-pollinationChestnut blight (Cryphonectria parasitica, from Asia, early 1900s)Blight killed about 4 billion American chestnuts; resistant Chinese chestnut grown for nuts; blight-tolerant hybrid and transgenic lines in development; monoecious catkins
Chickpea (garbanzo) (Cicer arietinum)FabaceaeHerbaceous; cool-season annualSeeds (pulse)SeedDrought-tolerant; dryland, semi-aridAscochyta blight; Fusarium wiltSelf-pollinated; hummus; desi (small, dark) and kabuli (large, cream) types; Fertile Crescent founder crop; India the top producer
Chicory and Belgian endive (Cichorium intybus)AsteraceaeHerbaceous perennial (biennial in culture)Leaves; blanched forced shoots ("chicons"); roasted taproot (coffee substitute, inulin)Seed; roots dug and forced in the darkCool-season; roots forced indoors in darkness for endiveFew pests; slugsClassic example of blanching (excluding light to keep tissue pale and less bitter); blue roadside wildflower
Chives (Allium schoenoprasum)AmaryllidaceaeHerbaceous monocot; perennial from small bulbsLeaves (hollow); edible flowersDivision of clumps; seedCold-hardy; sun to part shadeOnion thripsLilac-pink flower heads (umbels)
Christmas cactus (Schlumbergera × buckleyi)CactaceaeEpiphytic succulent; perennial houseplantOrnamental (flowers)Stem-segment cuttingsSD plus cool nights (about 55 to 65 °F) set flower buds; bright indirect lightRoot rot from overwatering; bud dropFlat stem segments are phylloclades (no true leaves); CAM; native to coastal mountains of Brazil
Chrysanthemum (Chrysanthemum × morifolium)AsteraceaeHerbaceous perennial (garden mums) and greenhouse cropOrnamental (flower heads, cut and potted)Stem cuttings; divisionSD (fall bloom); greenhouses use blackout cloth or night lighting for year-round crops; pinch for bushiness, disbud for large bloomsAphids; thrips; chrysanthemum white rust (Puccinia horiana)Origin China; pyrethrum insecticide comes from the related Tanacetum cinerariifolium
Cilantro (coriander) (Coriandrum sativum)ApiaceaeHerbaceous; cool-season annualLeaves (cilantro); fruit, a schizocarp ("coriander seed")Seed, direct-sownCool; bolts fast in heat and long days, so sow in successionAphids; powdery mildewSoapy taste to some people is genetic; umbel flowers
Cinchona (Cinchona spp.)RubiaceaeEvergreen tree; perennialBark (quinine)Seed; cuttingsCool, moist Andean slopes; tropical highlandsRoot rotsQuinine was the first effective malaria treatment and flavors tonic water; "Jesuit's bark"; native to the Andes (Peru, Ecuador); national tree of Peru
Cinnamon (Cinnamomum verum)LauraceaeEvergreen tree, coppiced as a shrub; perennialInner bark (dried into quills)Seed; cuttings; coppicingHot, humid tropicsLeaf spot; stripe cankerTrue cinnamon from Sri Lanka; cassia (C. cassia) is the common U.S. cinnamon and is higher in coumarin
Clematis (Clematis spp.)RanunculaceaeWoody (some herbaceous) climbing vine; perennialOrnamental (flowers)Layering; cuttings"Head in the sun, feet in the shade"; climbs by twining petioles; pruning group depends on bloom timeClematis wilt; slugsShowy parts are sepals; fruit an achene with a feathery style; toxic (protoanemonin)
Clove (Syzygium aromaticum)MyrtaceaeEvergreen tree; perennialDried unopened flower budsSeedHumid tropicsSudden death disease; few pestsEugenol (dental anesthetic); native to the Maluku (Spice) Islands, Indonesia
Clover, white and red (Trifolium repens, T. pratense)FabaceaeHerbaceous perennial (white); short-lived perennial (red)Forage, cover crop, lawn mixesSeed (inoculated); white clover spreads by stolonsCool-season legume; tolerates mowingClover root borer; root rotsN-fixing (Rhizobium leguminosarum bv. trifolii); red clover is Vermont's state flower; white clover has cyanogenic forms
Coconut (Cocos nucifera)ArecaceaePalm (monocot tree); perennialFibrous drupe: husk = coir (mesocarp); shell = endocarp; meat = cellular endosperm; water = liquid (free-nuclear) endospermSeed (whole nut)Tropical coasts; salt-tolerant; disperses by floatingLethal yellowing (phytoplasma); coconut rhinoceros beetleCopra (dried meat) yields coconut oil; "tree of life"
Coffee (Coffea arabica; C. canephora robusta)RubiaceaeEvergreen shrub or small tree; perennialSeeds ("beans"), two per red drupe ("cherry")Seed; cuttings; graftingArabica: tropical highlands, partial shade, self-fertile; robusta: lowland, self-incompatible, more caffeineCoffee leaf rust (Hemileia vastatrix); coffee berry borerArabica origin Ethiopia; Brazil is the top producer; caffeine deters insects and is allelopathic
Coleus (Coleus scutellarioides)LamiaceaeHerbaceous tender perennial grown as annualOrnamental (colorful foliage)Stem cuttings (root easily); seedShade and sun types; frost-tender; pinch flower spikesMealybugs; downy mildewSquare stem, opposite leaves; formerly Solenostemon
Coneflower, purple (Echinacea purpurea)AsteraceaeHerbaceous perennialOrnamental; roots and tops as herbal medicineSeed (cold stratification helps); divisionFull sun; drought-tolerant; midsummer to fall bloomAster yellows (phytoplasma); Japanese beetlesNative prairie plant; spiny cone of disk florets; seeds feed goldfinches
Cork oak (Quercus suber)FagaceaeEvergreen tree; perennialBark (cork = phellem from the cork cambium)Seed (acorns)Mediterranean climateFew major pestsBark stripped about every 9 years without killing the tree; Portugal produces about half the world's cork
Corn (maize) (Zea mays)PoaceaeGrass; warm-season annualGrain (caryopsis); sweet corn = immature kernels; also silage, oil, starch, ethanolSeed, after soil reaches about 50 °FFrost-tender; heavy N feeder; plant in blocks, not one long row, for wind pollination; growing degree days use a 50 °F baseEuropean corn borer; corn earworm; corn rootworm; common smut (Ustilago maydis)C4; monoecious (tassel = male, ear = female; silks are styles); prop roots; domesticated from teosinte in southern Mexico about 9,000 years ago; sweet corn genes su, se, sh2; Bt corn; one of the Three Sisters
Cotton (Gossypium hirsutum, upland)MalvaceaeShrubby perennial grown as warm-season annualSeed hairs (lint = epidermal trichomes) from the boll (capsule); cottonseed oil and mealSeedLong, hot, frost-free season; full sunBoll weevil (now eradicated from most of the U.S.); bollworms; Verticillium and Fusarium wiltsMost-used plant textile fiber; Bt cotton widespread; seeds contain toxic gossypol; Pima (G. barbadense) is extra-long staple; U.S. paper currency is 75% cotton, 25% linen
Cowpea (black-eyed pea) (Vigna unguiculata)FabaceaeHerbaceous; warm-season annualSeeds; immature pods; leavesSeedHeat- and drought-tolerant; grows on poor soilsCowpea curculio; aphids; root-knot nematodesOrigin West Africa; Southern U.S. New Year's dish; N-fixing
Crabapple (Malus spp.)RosaceaeDeciduous small tree; perennialOrnamental (flowers, fruit); pollinizer for applesBudding, graftingFull sun; hardyApple scab; fire blight; cedar-apple rust (choose resistant cultivars)Fruit 2 in. or less across; widely planted in orchards as pollinizers
Cranberry (Vaccinium macrocarpon)EricaceaeLow evergreen woody trailing vine; perennialFruit (berry from an inferior ovary)Stem cuttings (runners) pressed into bog sandAcid, sandy bogs; flooded for wet harvest (fruits float on internal air pockets) and winter protectionCranberry fruitworm; fruit rotsNative to North America; Wisconsin leads production; one of few native commercial fruits
Crape myrtle (Lagerstroemia indica)LythraceaeDeciduous shrub or small tree; perennialOrnamental (summer flowers, peeling bark)CuttingsHeat-loving, full sun; about zones 7 to 9; blooms on new woodPowdery mildew; crape myrtle bark scale; aphids (sooty mold)Over-pruning to stubs is called "crape murder"; origin China and Korea
Crocus (Crocus vernus and others)IridaceaeMonocot corm; perennialOrnamental (early spring flowers)Cormels; seedPlant corms in fall; needs winter chillingSquirrels and voles eat cormsAmong the first spring bulbs; saffron crocus is a different, fall-blooming species
Cucumber (Cucumis sativus)CucurbitaceaeHerbaceous vine with tendrils; warm-season annualFruit (immature pepo)Seed or transplants, about 2 to 3 weeks after last frostFrost-tender; trellis; monoecious (male flowers appear first), bees; gynoecious hybrids need a pollinizer; greenhouse ("English") types are parthenocarpicStriped and spotted cucumber beetles (spread bacterial wilt, Erwinia tracheiphila); cucumber mosaic virus; powdery and downy mildewBitterness from cucurbitacins; DN; origin India
Currant and gooseberry (Ribes spp.)GrossulariaceaeDeciduous shrub; perennialFruit (berry)Hardwood cuttings; layeringCool climates; tolerates part shade; self-fruitfulImported currantworm; powdery mildew; currant aphidAlternate host of white pine blister rust, so planting was banned federally (from about 1911 to 1966) and some states still restrict it; black currants high in vitamin C
Daffodil (Narcissus spp.)AmaryllidaceaeMonocot bulb (tunicate); perennialOrnamental (spring flowers)Offset bulbs (division)Plant in fall about 6 in. deep; needs chilling; let leaves die back naturally to refill the bulbNarcissus bulb fly; basal rot (Fusarium)All parts toxic (lycorine), so deer and rodents avoid them; trumpet is the corona
Dahlia (Dahlia hybrids)AsteraceaeHerbaceous perennial from tuberous rootsOrnamental (flower heads, cut flower)Division of tuberous roots (each needs a piece of crown with an eye); cuttings; seedWarm-season, full sun; frost-tender, so dig after first frost and store cool and dryEarwigs; slugs; powdery mildew; spider mitesNational flower of Mexico; textbook example of a tuberous root
Date palm (Phoenix dactylifera)ArecaceaePalm (monocot tree); perennialFruit (berry)Offshoots (suckers) to keep cultivars true; tissue cultureHot, dry air with irrigation ("feet in water, head in the fire")Bayoud disease (Fusarium); red palm weevilDioecious; hand pollination of female trees; origin Middle East and North Africa
Daylily (Hemerocallis spp.)AsphodelaceaeHerbaceous monocot perennial with fleshy rootsOrnamental (flowers)DivisionSun to part shade; very tough; each flower lasts one dayDaylily rust; aphids; thripsNot a true lily; toxic to cats; diploid and tetraploid cultivars
Dieffenbachia (dumb cane) (Dieffenbachia spp.)AraceaeHerbaceous tropical perennial; houseplantOrnamental (foliage)Cane (stem) cuttings; air layeringLow to medium light; warmMealybugs; spider mites; bacterial soft rotCalcium oxalate raphides make the mouth and tongue swell ("dumb cane")
Dill (Anethum graveolens)ApiaceaeHerbaceous annualLeaves (dill weed); fruit, a schizocarp ("dill seed")Seed, direct-sown (dislikes transplanting)Cool to warm; full sun; self-sowsAphids; caterpillars of black swallowtail (host plant)Umbels attract beneficial insects
Dogwood, flowering (Cornus florida)CornaceaeDeciduous understory tree; perennialOrnamental (spring bracts, red fruit, fall color)Softwood cuttings; grafting; seedPart shade; acidic, well-drained soilDogwood anthracnose (Discula destructiva); powdery mildew; borersWhite "petals" are four bracts around a cluster of tiny flowers; fruit a drupe; Virginia state tree and flower
Eggplant (Solanum melongena)SolanaceaeHerbaceous perennial grown as warm-season annualFruit (berry)Seed, started indoors and transplantedNeeds the most heat of the common nightshade crops; frost-tenderFlea beetles; Colorado potato beetle; Verticillium wiltOld World origin (India, Southeast Asia)
Elm, American (Ulmus americana)UlmaceaeDeciduous vase-shaped tree; perennialShade and street treeSeed; cuttings or grafts of resistant cultivars ('Princeton', 'Valley Forge')Tolerant of urban conditionsDutch elm disease (Ophiostoma, spread by elm bark beetles, a vascular wilt); elm yellows (phytoplasma)Dutch elm disease killed most U.S. street elms after about 1930; fruit a samara
English ivy (Hedera helix)AraliaceaeEvergreen woody vine; perennialOrnamental groundcover, houseplantStem cuttingsShade-tolerant; climbs with aerial (adventitious) rootsBacterial leaf spot; spider mites (indoors)Juvenile lobed climbing shoots vs adult unlobed flowering shoots (phase change); invasive in many U.S. forests; berries toxic
Fennel (Foeniculum vulgare)ApiaceaeHerbaceous perennial, often grown as annualSwollen leaf bases ("bulb," Florence fennel); leaves; fruit, a schizocarp ("seed")SeedCool to warm; full sunAphids; swallowtail caterpillarsAnise flavor (anethole); often said to inhibit nearby plants (allelopathy claims are weakly supported), so usually planted apart; invasive in California
Fig (Ficus carica)MoraceaeDeciduous tree or large shrub; perennialSyconium (multiple fruit: fleshy hollow receptacle lined with tiny flowers)Hardwood cuttings; layeringAbout zones 7 to 10; full sun; common figs set fruit without pollinationFig rust; root-knot nematodes; fig mosaic; birdsSmyrna types need caprification by the fig wasp (Blastophaga psenes); milky latex irritates skin; one of the earliest domesticated plants (Middle East)
Flax (Linum usitatissimum)LinaceaeHerbaceous; cool-season annualStem bast (phloem) fibers, retted for linen; seeds (linseed oil, flaxseed)SeedCool, moist; fiber flax pulled, not cutFlax rust (Melampsora lini); flax wilt (Fusarium)Flax rust is where H. H. Flor described gene-for-gene resistance; seeds rich in omega-3 (ALA); Fertile Crescent; fruit a capsule (boll)
Forsythia (Forsythia × intermedia)OleaceaeDeciduous shrub; perennialOrnamental (yellow flowers before leaves in early spring)Softwood cuttings; layering (branch tips root on contact)Full sun; very hardy; prune right after flowering (blooms on old wood)Few pests; gallEasily forced indoors in late winter
Foxglove (Digitalis purpurea)PlantaginaceaeHerbaceous biennial (leaf rosette year 1, flower spike year 2)Ornamental; leaves, source of cardiac glycosidesSeed (self-sows)Part shade; needs cold (vernalization) to flowerPowdery mildew; leaf spotDigitalis glycosides (digitoxin; digoxin comes mainly from D. lanata) for heart failure (William Withering, 1785); all parts very toxic; bumblebee-pollinated
Gardenia (Gardenia jasminoides)RubiaceaeEvergreen shrub; perennialOrnamental (fragrant white flowers)CuttingsAcid soil (pH about 5 to 6); humidity; steady temperatures (swings cause bud drop)Whiteflies; mealybugs; sooty mold; iron chlorosis in alkaline soilCoffee family; origin southern China and nearby East Asia
Garlic (Allium sativum)AmaryllidaceaeHerbaceous monocot; perennial grown as annualCompound bulb of cloves (each clove is an axillary bud with a thick storage leaf)Individual cloves, planted in fall; true seed is rareNeeds cold to form bulbs; harvest early to midsummer when lower leaves brown; cure before storageWhite rot (Sclerotium cepivorum); onion thrips; stem and bulb nematodeAllicin forms when crushing mixes alliin with the enzyme alliinase; hardneck types send up scapes with bulbils; origin Central Asia
Geranium (zonal) (Pelargonium × hortorum)GeraniaceaeHerbaceous tender perennial grown as annualOrnamental (flowers)Stem cuttings; seedFull sun; frost-tenderBacterial blight (Xanthomonas); botrytis; geranium budwormHardy "true geraniums" (cranesbills) are genus Geranium; fruit a beaked schizocarp; South Africa
Ginger (Zingiber officinale)ZingiberaceaeHerbaceous monocot; perennialRhizomeRhizome pieces with budsTropical; part shade; rich, moist, well-drained soilBacterial wilt (Ralstonia); soft rotPungency from gingerol; origin South and Southeast Asia; India the top producer
Ginkgo (Ginkgo biloba)GinkgoaceaeDeciduous gymnosperm tree; perennialShade and street tree; seeds eaten in Asia; leaf extractsGrafting or cuttings of male clones; seedVery tolerant of pollution, salt and compaction; few pestsAlmost noneDioecious; plant males, since female seeds have a foul fleshy coat (butyric acid); fan leaves with forked (dichotomous) veins; only living species of its phylum ("living fossil")
Gladiolus (Gladiolus hybrids)IridaceaeMonocot corm; perennialOrnamental (cut flower spikes)CormelsPlant in succession in spring; tender, dig in fall in the NorthGladiolus thrips; Fusarium corm rotFlowers on a spike; origin South Africa
Grape (Vitis vinifera, European; V. labrusca, Concord; V. rotundifolia, muscadine)VitaceaeDeciduous woody vine climbing by tendrils; perennialFruit (berry), in clustersHardwood cuttings; vinifera grafted onto phylloxera-resistant American rootstocksFull sun, well-drained; fruit on shoots from 1-year-old canes; heavy dormant pruning (cane or spur); most self-fruitful (some muscadines female, need pollinizer)Phylloxera (root aphid); powdery mildew (Erysiphe necator); downy mildew (Plasmopara viticola); Pierce's disease (Xylella fastidiosa, xylem-clogging bacterium spread by sharpshooters)Bordeaux mixture invented for downy mildew; seedless table grapes by stenospermocarpy, sized up with gibberellin sprays; non-climacteric; origin Caucasus and Near East
Grapefruit (Citrus × paradisi)RutaceaeEvergreen tree; perennialFruit (hesperidium)Budded onto citrus rootstocks (sour orange, Swingle citrumelo and others)Frost-tender, about zones 9 to 11; self-fruitfulCitrus greening (huanglongbing, spread by Asian citrus psyllid); citrus cankerPomelo × sweet orange hybrid found in Barbados (1700s); furanocoumarins interfere with many drugs
Hazelnut (filbert) (Corylus avellana)BetulaceaeDeciduous shrub or small tree; perennialNut (in a leafy husk)Layering; suckers; graftingMild, wet winters; monoecious, wind-pollinated in midwinter; self-incompatible, needs pollinizersEastern filbert blight (Anisogramma anomala); filbertwormOregon's Willamette Valley grows nearly all U.S. hazelnuts; Turkey leads the world
Hemp (Cannabis sativa)CannabaceaeHerbaceous; warm-season annualStem bast fibers (retted); seeds (oil, food); flowers (CBD)SeedSD; full sunGray mold (Botrytis); hemp russet miteMostly dioecious (monoecious cultivars exist); U.S. industrial hemp must contain under 0.3% THC (2018 Farm Bill)
Holly (Ilex opaca, American; I. aquifolium, English)AquifoliaceaeEvergreen tree or shrub; perennialOrnamental (spiny leaves, red drupes)Cuttings; seed (slow)Acid soil; sun to part shadeHolly leafminer; scale; leaf spotDioecious: females bear fruit only with a male nearby; berries toxic
Hops (Humulus lupulus)CannabaceaeHerbaceous perennial bine (twines, climbs with hooked hairs)Female inflorescences ("cones," strobiles) with lupulin glandsRhizome cuttingsTall trellises (about 18 ft); flowers as days shorten; grown about 35 to 55° latitudeDowny mildew (Pseudoperonospora humuli); powdery mildew; spider mites; hop aphidDioecious; only unpollinated female plants grown; bitter acids flavor and preserve beer; Yakima Valley, Washington leads U.S.
Horseradish (Armoracia rusticana)BrassicaceaeHerbaceous perennialTaprootRoot cuttings ("sets"); rarely sets viable seedCool, hardy; spreads and can become weedyFlea beetles; root rotsHeat from allyl isothiocyanate (from sinigrin); wasabi is a different plant
Hosta (Hosta spp.)AsparagaceaeHerbaceous perennialOrnamental (foliage)DivisionShade-tolerant; moist soilSlugs; deer; Hosta virus XOrigin Japan, China and Korea; top-selling shade perennial
Hyacinth (Hyacinthus orientalis)AsparagaceaeMonocot bulb (tunicate); perennialOrnamental (fragrant spring flowers)Offsets; bulblets made by scooping or scoring the basal plateFall-planted; needs chilling; easily forced in waterBulb rots; bulb mitesBulbs irritate skin (calcium oxalate)
Hydrangea, bigleaf (Hydrangea macrophylla)HydrangeaceaeDeciduous shrub; perennialOrnamental (flower heads)Softwood cuttingsPart shade, moist soil; most bloom on old wood (rebloomers also on new)Powdery mildew; leaf spotsColor depends on soil pH through aluminum uptake: acid soil = blue, alkaline = pink (white types do not change); showy parts are sepals of sterile flowers; mophead and lacecap types
Impatiens (Impatiens walleriana)BalsaminaceaeHerbaceous tender perennial grown as annualOrnamental (bedding flowers)Seed; cuttingsShade; frost-tender; moist soilImpatiens downy mildew (Plasmopara obducens, epidemic from about 2011)Explosive capsules ("touch-me-not"); New Guinea impatiens are resistant to the downy mildew
Iris, bearded (Iris × germanica)IridaceaeHerbaceous monocot perennial from a rhizomeOrnamental (flowers)Division of rhizomes after bloom (mid to late summer)Full sun; plant rhizome at the soil surfaceIris borer; bacterial soft rotFalls are sepals, standards are petals, the "beard" is on the falls; Siberian iris has fibrous roots; fleur-de-lis
Jade plant (Crassula ovata)CrassulaceaeSucculent shrub; perennial houseplantOrnamentalLeaf or stem cuttingsBright light; let soil dry between wateringsMealybugs; root rotCAM; South Africa
Jatropha (Jatropha curcas)EuphorbiaceaeShrub or small tree; perennialSeeds (oil for biodiesel)Cuttings; seedDrought-tolerant; grows on marginal land; tropicalFew serious pestsSeeds toxic (curcin, phorbol esters), so oil is not edible; used as living fences; origin Central America
Jerusalem artichoke (sunchoke) (Helianthus tuberosus)AsteraceaeHerbaceous perennialStem tubers (store inulin, not starch)TubersHardy; full sun; spreads aggressivelyFew pestsNative to North America; a sunflower, neither an artichoke nor from Jerusalem
Juniper, eastern redcedar (Juniperus virginiana)CupressaceaeEvergreen conifer tree; perennialAromatic wood (chests, pencils); fleshy seed cones ("berries") eaten by birdsSeed; cuttingsVery drought-tolerant; invades prairies when fire is suppressedBagwormsAlternate host of cedar-apple rust (Gymnosporangium juniperi-virginianae: galls with orange jelly horns in spring); dioecious; gin is flavored with common juniper (J. communis)
Jute (Corchorus capsularis, C. olitorius)MalvaceaeHerbaceous; annualStem bast fibers, rettedSeedWarm, humid monsoon climate; flooded lowlandsStem rot; jute hairy caterpillar"Golden fiber"; burlap and gunny sacks; India and Bangladesh grow most of it
Kalanchoe (Kalanchoe blossfeldiana)CrassulaceaeSucculent; perennial potted plantOrnamental (flowers)Stem cuttingsSD (classic greenhouse short-day crop); bright lightMealybugs; powdery mildewCAM; related K. daigremontiana forms plantlets on leaf margins (vegetative reproduction)
Kale and collards (Brassica oleracea, Acephala and Viridis groups)BrassicaceaeHerbaceous; biennial grown as annualLeavesSeed; transplantsVery cold-hardy; sweeter after frost (starch converts to sugar)Cabbageworms; aphids; flea beetlesClose to wild cabbage, with no head; collards are a heat-tolerant Southern staple
Kentucky bluegrass (Poa pratensis)PoaceaeTurf grass; cool-season perennialLeaves (lawns, pastures)Seed; sodFull sun; goes dormant in summer heat and drought; self-repairs by rhizomesLeaf spot and melting-out; dollar spot; white grubsC3; seed often forms by apomixis; native to Europe and northern Asia despite the name
Kiwifruit (Actinidia deliciosa)ActinidiaceaeDeciduous woody twining vine; perennialFruit (berry)Grafting; cuttingsNeeds chilling; sturdy trellis; frost-sensitive in springBacterial canker (Psa, Pseudomonas syringae pv. actinidiae)Dioecious: about one male vine per 6 to 8 females; origin China ("Chinese gooseberry"); commercialized in New Zealand
Kohlrabi (Brassica oleracea, Gongylodes group)BrassicaceaeHerbaceous; biennial grown as annualSwollen stem above groundSeed; transplantsCool-season; fast; harvest at 2 to 3 in.Cabbageworms; flea beetles; clubrootA stem, not a root
Kudzu (Pueraria montana var. lobata)FabaceaeSemi-woody perennial vineOnce planted for erosion control and forage; starchy rootsRooting runners; crownsWarm, humid Southeast U.S.; grows up to about a foot a day in summerKudzu bugPromoted by the Soil Conservation Service in the 1930s; once on the federal noxious weed list (late 1990s) and still a state-listed noxious weed in many states; N-fixing
Lavender, English (Lavandula angustifolia)LamiaceaeEvergreen woody subshrub; perennialFlower spikes (essential oil: linalool, linalyl acetate)Softwood and semi-hardwood cuttingsFull sun; lean, well-drained, neutral to alkaline soil; drought-tolerant xeriscape plantRoot rot in wet soilMediterranean origin; Provence, France
Leek (Allium ampeloprasum, Porrum group)AmaryllidaceaeHerbaceous monocot; biennial grown as annualPseudostem (rolled leaf sheaths), blanched by hilling or trenchingSeed, transplantedLong, cool season; cold-hardyOnion thrips; leek mothNational emblem of Wales
Lemon (Citrus × limon)RutaceaeEvergreen tree; perennialFruit (hesperidium)Budding onto citrus rootstocks; cuttingsVery frost-tender; flowers and fruits much of the yearCitrus greening; scale; citrus canker'Eureka', 'Lisbon'; 'Meyer' is a hybrid of citron with mandarin-type citrus, not a true lemon; lemon juice prevented scurvy (James Lind, 1747)
Lentil (Lens culinaris)FabaceaeHerbaceous; cool-season annualSeeds (pulse)SeedSemi-arid, cool; drought-tolerantAscochyta blight; aphidsThe lens-shaped seed named the optical lens; Fertile Crescent founder crop; Canada leads exports
Lettuce (Lactuca sativa)AsteraceaeHerbaceous; cool-season annualLeaves (crisphead/iceberg, butterhead, romaine, loose-leaf)Seed (many cultivars need light to germinate; dormant above about 80 °F)Cool; bolts and turns bitter in heat and long days (LD); common hydroponic cropAphids; downy mildew (Bremia lactucae); lettuce mosaic virus; slugsTipburn is calcium deficiency; milky latex; 'Grand Rapids' seed used in the red/far-red phytochrome experiments; origin Mediterranean and Egypt
Lilac (Syringa vulgaris)OleaceaeDeciduous shrub; perennialOrnamental (fragrant spring flowers)Suckers; softwood cuttings; graftingNeeds winter chilling; full sun; neutral to alkaline soil; prune right after floweringPowdery mildew; lilac borer; bacterial blightNew Hampshire state flower
Lily (Lilium spp.; Easter lily L. longiflorum)LiliaceaeMonocot scaly bulb (non-tunicate); perennialOrnamental (flowers)Bulb scales (scaling); bulbils (tiger lily); bulbletsSun on top, cool roots; Easter lilies forced for springLily leaf beetle; botrytis; viruses (aphids)Extremely toxic to cats (kidney failure); most U.S. Easter lily bulbs come from the California-Oregon border
Lily of the valley (Convallaria majalis)AsparagaceaeHerbaceous monocot perennial from a rhizomeOrnamental (fragrant flowers); groundcoverDivision of rhizomes ("pips")Shade; spreads aggressivelyFew pestsAll parts toxic (cardiac glycosides such as convallatoxin)
Lime (Citrus × aurantiifolia, Key lime; C. × latifolia, Persian)RutaceaeEvergreen tree; perennialFruit (hesperidium)Budding; cuttings; air layeringKey lime is among the most cold-sensitive citrusCitrus greening; citrus cankerPersian (Tahiti) lime is a seedless triploid
Lotus, sacred (Nelumbo nucifera)NelumbonaceaeAquatic herbaceous perennialRhizome; seeds; ornamental flowersRhizome division; seed (scarify)Shallow warm ponds; full sunAphidsSeeds stayed viable about 1,300 years; leaves shed water (lotus effect); flowers make heat (thermogenic); not a water lily
Luffa (loofah) (Luffa aegyptiaca)CucurbitaceaeHerbaceous vine; warm-season annualMature fruit (pepo) retted to its fibrous vascular network (sponge); young fruit eatenSeedLong, hot season; trellisCucumber beetles; powdery mildewThe "sponge" is the fruit's fibrous vascular skeleton
Lychee (Litchi chinensis)SapindaceaeEvergreen tree; perennialAril (white flesh around the seed)Air layering (marcotting); graftingSubtropical; needs a cool, dry winter to flowerLychee erinose mite; fruit borersRelated longan and rambutan also have arils; origin southern China
Macadamia (Macadamia integrifolia, M. tetraphylla)ProteaceaeEvergreen tree; perennialSeed (kernel) in a very hard shell, from a follicleGraftingSubtropical, frost-sensitiveMacadamia felted coccid; nut borersOrigin eastern Australia (Queensland and northern New South Wales); commercialized in Hawaii; toxic to dogs
Madagascar periwinkle (Catharanthus roseus)ApocynaceaeHerbaceous tender perennial grown as annual ("annual vinca")Ornamental; leaves yield vinblastine and vincristineSeed; cuttingsHeat- and drought-tolerant; full sunPhytophthora aerial blight; root rot in wet soilVincristine treats childhood leukemia; vinblastine Hodgkin lymphoma; endemic to Madagascar; toxic; not the groundcover Vinca minor
Magnolia, southern (Magnolia grandiflora)MagnoliaceaeEvergreen tree; perennialOrnamental (large white flowers)Seed; cuttings; graftingWarm, humid Southeast; acid soilMagnolia scale; leaf spotsBeetle-pollinated; tepals (sepals and petals alike); aggregate of follicles with red seeds; Mississippi state tree and flower
Mandarin and tangerine (Citrus reticulata)RutaceaeEvergreen tree; perennialFruit (hesperidium, loose peel)Budding onto citrus rootstocksSatsuma mandarins are among the most cold-hardy edible citrusCitrus greening; scale; mitesOne of the ancestral citrus species (with pomelo and citron); 'Clementine' is seedless when isolated from pollinizers
Mango (Mangifera indica)AnacardiaceaeEvergreen tree; perennialFruit (drupe)Veneer or cleft grafting onto seedling rootstock; polyembryonic types come true from seed (nucellar embryos)Tropical or subtropical; a dry season triggers flowering; frost-tenderAnthracnose (Colletotrichum); powdery mildew; mango malformationSap and peel contain urushiol-like compounds (rash); origin India, which is the top producer
Maple, sugar (Acer saccharum)SapindaceaeDeciduous tree; perennialXylem sap (maple syrup); timberSeedTap in late winter when freezing nights alternate with thawing days; about 40 gal sap per 1 gal syrupTar spot; Verticillium wilt; Asian longhorned beetleFruit a double samara (schizocarp); state tree of New York, Vermont, West Virginia and Wisconsin; Quebec makes most of the world's syrup
Marigold (Tagetes erecta, African; T. patula, French)AsteraceaeHerbaceous; warm-season annualOrnamental (flower heads); petals for dyes and poultry feed pigmentSeed (easy)Full sun; heat-tolerant; frost-tenderSpider mites; botrytis; slugsRoots of French marigold suppress root-knot nematodes (alpha-terthienyl); native to Mexico and Central America despite the names; Day of the Dead flower; pot marigold (Calendula) is a different genus (same family, Asteraceae)
Millet, pearl (Cenchrus americanus, formerly Pennisetum glaucum)PoaceaeGrass; warm-season annualGrain (caryopsis)SeedThe most heat- and drought-tolerant cereal; sandy, poor soils (Sahel, India)Downy mildew (Sclerospora graminicola); ergotC4; origin West Africa
Mint (Mentha × piperita, peppermint; M. spicata, spearmint)LamiaceaeHerbaceous perennialLeaves (menthol in peppermint, carvone in spearmint)Rhizome and stolon division; cuttings (peppermint is a sterile hybrid)Moist soil, sun to part shade; very invasive, so grow in containersMint rust (Puccinia menthae); Verticillium wiltSquare stems, opposite leaves; said to repel ants; Idaho, Oregon and Washington lead U.S. mint oil production
Morning glory (Ipomoea purpurea, I. tricolor)ConvolvulaceaeHerbaceous twining vine; warm-season annualOrnamental (flowers)Seed (hard coat: nick or soak to scarify)Full sun; frost-tender; flowers open in the morning and fade by afternoonAphids; leaf minersSeeds toxic (ergoline alkaloids); sweet potato relative; field bindweed is a related weed
Mustard (Brassica juncea, brown; Sinapis alba, white; B. nigra, black)BrassicaceaeHerbaceous; cool-season annualSeeds (from siliques, the condiment); leaves (greens)SeedCool; bolts in heatFlea beetles; aphidsPungency from glucosinolates (in brown and black mustard, sinigrin to allyl isothiocyanate; white mustard uses sinalbin); used as a biofumigant cover crop
Nasturtium (Tropaeolum majus)TropaeolaceaeHerbaceous annual (trailing or bushy)Edible flowers and peppery leaves; ornamentalSeed (large; soak)Full sun; poor soil gives more flowers (excess N gives leaves)Aphids (used as a trap crop)Round peltate leaves; spurred flowers; origin Andes; genus Nasturtium is watercress
Nutmeg and mace (Myristica fragrans)MyristicaceaeEvergreen tropical tree; perennialSeed (nutmeg) and its red aril (mace)Seed; grafting to get known femalesHumid tropicsFew serious pestsDioecious (sex unknown until flowering); myristicin toxic in large doses; native to Indonesia's Banda Islands
Oak (Quercus alba, white; Q. rubra, red; others)FagaceaeDeciduous (live oaks evergreen) tree; perennialTimber; acorns (nut in a cupule); shade treeSeed (acorns cannot be dried)Mostly full sun; long-livedOak wilt (Bretziella fagacearum); sudden oak death (Phytophthora ramorum); spongy (gypsy) moth; gallsMonoecious, wind-pollinated catkins; white oak acorns mature in one season, red oak in two; tannins; U.S. national tree (2004)
Oats (Avena sativa)PoaceaeGrass; cool-season annualGrain (caryopsis, a hulled "groat") in a panicleSeedCool, moist; tolerates acid soil; a common nurse cropCrown rust (Puccinia coronata; alternate host buckthorn); barley yellow dwarfC3; LD; beta-glucan fiber
Oil palm (Elaeis guineensis)ArecaceaePalm (monocot tree); perennialFruit (drupe): palm oil from the mesocarp, palm kernel oil from the seedSeed; tissue cultureHumid tropicsBasal stem rot (Ganoderma); rhinoceros beetlesWorld's most-produced vegetable oil; Indonesia and Malaysia grow most; plantations drive rainforest loss; weevil-pollinated; origin West Africa
Okra (Abelmoschus esculentus)MalvaceaeHerbaceous; warm-season annualImmature fruit (capsule, "pod"), picked 2 to 4 in. longSeed (hard coat; soak), direct-sown in warm soilHeat-loving; frost-tenderRoot-knot nematodes; stink bugs; corn earwormMucilage thickens gumbo; hibiscus-like flowers; origin Africa
Olive (Olea europaea)OleaceaeEvergreen tree; perennial, can live over 1,000 yearsFruit (drupe; oil from the mesocarp)Cuttings; graftingMediterranean climate: mild winter chill for flowering, hot dry summer; wind-pollinated; alternate bearingOlive fruit fly; olive knot (Pseudomonas savastanoi); Xylella fastidiosa (Italy); Verticillium wiltBitter oleuropein removed by curing (lye or brine); Spain the top producer
Onion (Allium cepa)AmaryllidaceaeHerbaceous monocot; biennial grown as annualBulb (tunicate: fleshy leaf bases on a short stem, the basal plate)Seed; sets (small bulbs); transplantsCool-season, frost-hardy; bulbing is triggered by day length: short-day cultivars (South), intermediate, long-day (North); cure tops dry before storageOnion thrips; onion maggot; pink root; neck rot (Botrytis)Tearing from syn-propanethial-S-oxide; low-sulfur soils make sweet onions (Vidalia); epidermis is a standard microscope lab
Opium poppy (Papaver somniferum)PapaveraceaeHerbaceous; annualLatex from the unripe capsule (morphine, codeine, thebaine); seeds (culinary)SeedCool-season; full sunDowny mildewLatex in laticifers; capsule opens by pores; source of all natural opiates
Orange, sweet (Citrus × sinensis)RutaceaeEvergreen tree; perennialFruit (hesperidium; juice sacs grow from the endocarp)Budding onto rootstocks (sour orange, trifoliate orange hybrids); nucellar seedlingsSubtropical, frost-tender (about zones 9 to 11); self-fruitful; 7 to 12 months from bloom to harvest; fruit stores on the treeCitrus greening (HLB; Asian citrus psyllid); citrus canker; tristeza virus; PhytophthoraNon-climacteric; navel oranges are seedless (parthenocarpic) clones of one Brazilian mutation; Brazil the top producer; ancestry a mandarin × pomelo hybrid, mostly mandarin
Orchid, moth (Phalaenopsis hybrids)OrchidaceaeEpiphytic monocot; perennialOrnamental (flowers); top U.S. potted flowering plant by wholesale valueTissue culture (mericloning); keikis (plantlets on the flower stalk)Bright indirect light; bark media; cool nights trigger flower spikesMealybugs; scale; crown rotDust-like seeds lack endosperm and need mycorrhizal fungi (or sterile agar) to germinate; aerial roots with velamen; CAM; pollinia; lip (labellum) and column
Oregano (Origanum vulgare)LamiaceaeHerbaceous perennialLeavesCuttings; division; seedFull sun; lean, dry soilRoot rot in wet soil; aphidsCarvacrol and thymol; Mediterranean
Pansy (Viola × wittrockiana)ViolaceaeHerbaceous; short-lived perennial grown as cool-season annualOrnamental (flowers; edible)SeedFrost-tolerant; fall and winter bedding plant in the SouthDowny mildew; anthracnose; slugsNectar guides on the petals
Papaya (Carica papaya)CaricaceaeLarge, fast, short-lived tree-like herb; perennialFruit (berry)SeedTropical, frost-freePapaya ringspot virus (aphids); fruit fliesPlants are female, male or hermaphrodite; transgenic virus-resistant 'Rainbow' and 'SunUp' (1998) saved Hawaii's papaya industry; papain (latex enzyme) tenderizes meat
Parsley (Petroselinum crispum)ApiaceaeHerbaceous; biennial grown as annualLeaves (curly or flat Italian); root in root parsleySeed (slow, 3 to 4 weeks; soak)Cool-season; sun to part shadeBlack swallowtail caterpillars; carrot rust flyUmbel flowers in the second year
Parsnip (Pastinaca sativa)ApiaceaeHerbaceous; biennial grown as annualTaprootSeed (must be fresh; short-lived)Long, cool season; frost turns starch to sugar, so harvest after frost or in springCarrot rust fly; cankerWild parsnip sap causes phytophotodermatitis (furanocoumarins)
Passion flower (Passiflora incarnata; P. edulis passion fruit)PassifloraceaeHerbaceous or woody tendril vine; perennialOrnamental; fruit (berry, juicy arils around seeds)Seed; cuttingsFull sun; P. incarnata hardy, passion fruit frost-tenderNematodes; viruses; fungal leaf spotsCorona of filaments; host plant of gulf fritillary butterflies
Pawpaw (Asimina triloba)AnnonaceaeDeciduous understory tree; perennialFruit (berry)Seed (cold stratification); graftingPart shade when young; needs 2 cultivars for cross-pollinationFew pestsLargest edible fruit native to North America; maroon flowers pollinated by flies and beetles; host of zebra swallowtail
Pea, garden (Pisum sativum)FabaceaeHerbaceous vine climbing by tendrils (modified leaflets); cool-season annualSeeds (shelling peas); edible immature pods (snow, snap)Seed, sown as soon as the soil can be worked in early springCool, frost-tolerant; stops producing in heat; self-pollinatingPowdery mildew; aphids; Fusarium wilt; pea enation mosaicMendel's genetics organism; hypogeal germination; N-fixing; Fertile Crescent
Peach and nectarine (Prunus persica)RosaceaeDeciduous tree; perennial, short-lived (about 15 to 20 years)Fruit (drupe; clingstone or freestone)Budding onto seedling peach rootstocks ('Lovell', nematode-resistant 'Nemaguard')Needs chilling (low-chill cultivars for the South); most self-fruitful; fruits on 1-year-old wood; open-center (vase) pruningPeach leaf curl (Taphrina deformans); brown rot (Monilinia fructicola); plum curculio; peach tree borerNectarine = a recessive fuzzless mutation; climacteric; origin China; California leads U.S. production
Peanut (Arachis hypogaea)FabaceaeHerbaceous; warm-season annualSeeds from a pod (legume) that matures undergroundSeedLong warm season; sandy, well-drained soil; calcium (gypsum) for pod fill; self-pollinatingLeaf spots (Cercospora); white mold (Sclerotium rolfsii); aflatoxin (Aspergillus flavus)After pollination the peg (gynophore) pushes the ovary into the soil (geocarpy); C3; N-fixing; George Washington Carver; origin South America; Georgia leads U.S.
Pear (Pyrus communis, European; P. pyrifolia, Asian)RosaceaeDeciduous tree; perennialFruit (pome) with grit (stone cells = sclereids)Grafted onto pear seedlings, 'OH×F' clones or quince (dwarfing)Needs chilling; most need a pollinizer; European pears are picked mature but hard and ripened off the tree; Asian pears ripen on the treeFire blight (very susceptible); pear psylla; codling mothPacific Northwest leads U.S.; 'Bartlett'
Pear, Callery ('Bradford') (Pyrus calleryana)RosaceaeDeciduous ornamental tree; perennialOrnamental (white spring flowers)Grafted cultivarsTolerant of urban sites; weak, narrow crotches split in stormsFairly fire-blight-resistantFlowers smell foul; different cultivars cross-pollinate, so seedlings form invasive thorny thickets; banned from sale in Ohio and some other states
Pecan (Carya illinoinensis)JuglandaceaeDeciduous tree; perennialSeed of a drupe-like nut (hard shell inside a splitting husk)Budding or grafting onto seedling pecan rootstockLong, hot season; monoecious, wind-pollinated, with protandrous and protogynous cultivars (plant both types); alternate bearingPecan scab; pecan weevil; hickory shuckworm; zinc deficiency (rosette)Native to the Mississippi valley and Texas; Texas state tree; Georgia and New Mexico lead U.S.
Peony (Paeonia lactiflora; tree peonies)PaeoniaceaeHerbaceous perennial with tuberous roots (tree peony is woody)Ornamental (flowers; cut flower)Division in fall, buds ("eyes") no more than about 2 in. deep (deeper = no flowers)Needs winter chilling; full sunBotrytis blight; ants on buds (harmless, attracted to nectar)Very long-lived; Indiana state flower; fruit an aggregate of follicles
Pepper (bell and chili) (Capsicum annuum; C. chinense, habanero)SolanaceaeHerbaceous perennial grown as warm-season annualFruit (berry); bell peppers eaten green (unripe) or ripeSeed, started indoors and transplantedWarmer soil than tomato; flowers drop in extreme heat or coldBlossom-end rot (calcium); bacterial leaf spot; Phytophthora blight; aphidsCapsaicin is concentrated in the placenta ("ribs"), measured in Scoville units; origin Mexico and South America
Persimmon (Diospyros kaki, Asian; D. virginiana, American)EbenaceaeDeciduous tree; perennialFruit (berry with persistent calyx)Grafted onto seedling rootstocksAsian about zones 7 to 10; many cultivars set fruit without pollinationFew serious pestsAstringent types ('Hachiya') must be soft-ripe (tannins); non-astringent ('Fuyu') eaten firm; American persimmon is native
Petunia (Petunia × atkinsiana)SolanaceaeHerbaceous tender perennial grown as annualOrnamental (bedding, baskets)Seed (tiny, needs light); cuttingsFull sun; frost-tenderBotrytis; tobacco budworm; aphidsRNA silencing (co-suppression) was discovered in petunia flower color (1990); among the first transgenic plants (1983); origin South America
Pine (Pinus strobus, eastern white; P. taeda, loblolly; others)PinaceaeEvergreen conifer tree; perennialTimber and pulp; resin (turpentine, rosin); seeds (pine nuts from pinyon and stone pines); Christmas treesSeedFull sun; acid soilsWhite pine blister rust (Cronartium ribicola, alternate host Ribes); pine bark beetlesNeedles in bundles (fascicles): white pine 5, loblolly 3, red pine 2; seed cones take about 2 years to mature; gymnosperm
Pineapple (Ananas comosus)BromeliaceaeHerbaceous monocot rosette; perennialMultiple fruit (berries of many flowers fused with bracts and the axis)Crowns, slips and suckersTropical; well-drained, acid soil; flowering forced with ethylene (ethephon) or calcium carbideMealybug wilt; Phytophthora heart rotCAM; self-incompatible, so commercial fruit is seedless; bromelain enzyme; non-climacteric; origin South America (Paraguay, Brazil)
Pistachio (Pistacia vera)AnacardiaceaeDeciduous tree; perennialSeed of a semi-dry drupe; shell (endocarp) splits when ripeBudded onto P. atlantica, P. integerrima or hybrid ('UCB-1') rootstocksHot, dry summers and cold winters (chilling); dioecious, wind-pollinated, about one male per 8 to 24 females; alternate bearingVerticillium wilt; navel orangeworm; aflatoxinFemale 'Kerman', male 'Peters'; origin Iran and Central Asia; California leads U.S.
Plum (Prunus domestica, European; P. salicina, Japanese)RosaceaeDeciduous tree; perennialFruit (drupe); dried as prunesBudding onto plum or peach rootstocksEuropean types often self-fruitful; Japanese types need a pollinizer; fruit on spurs of older wood, so prune lightlyBlack knot (Apiosporina morbosa); brown rot; plum curculio; plum pox virusEuropean plum is hexaploid; prunes are dried European plums
Poinsettia (Euphorbia pulcherrima)EuphorbiaceaeWoody shrub; perennial, grown as potted plantOrnamental (red bracts around tiny cyathia)Vegetative (stem) cuttingsSD: needs about 14 hr of uninterrupted darkness nightly for 8 to 10 weeks from about October 1; warmSilverleaf whitefly; Pythium root rot; botrytisBest-selling U.S. holiday potted plant by number (orchids now lead in wholesale value); milky latex irritates, but toxicity is overstated; origin Mexico; free-branching cultivars carry a phytoplasma
Pomegranate (Punica granatum)LythraceaeDeciduous shrub or small tree; perennialFleshy seed coats (sarcotesta) of the many seedsHardwood cuttingsHot, dry summers; self-fruitfulHeart rot; leaf-footed bugsLeathery fruit called a balausta; origin Iran
Potato (Solanum tuberosum)SolanaceaeHerbaceous perennial grown as cool-season annualStem tuber (eyes are axillary buds in the axils of scale-leaf scars)Certified "seed potatoes": tuber pieces about 1.5 to 2 oz, each with 1 to 2 eyes, cut and cured; true seed rarelyCool-season; short days and cool nights favor tuber formation; hill soil over tubers; pH about 5.0 to 5.5 limits scabLate blight (Phytophthora infestans, Irish famine 1845 to 1849); Colorado potato beetle; early blight; common scab (Streptomyces scabies); potato virus YLight makes tubers green (chlorophyll) and raises toxic glycoalkaloids (solanine); C3; berries toxic; origin Andes (Peru, Bolivia)
Pothos (Epipremnum aureum)AraceaeEvergreen climbing vine; perennial houseplantOrnamental (foliage)Stem cuttings (root in water)Low light tolerant; let soil dryRoot rot; mealybugsCalcium oxalate, toxic to pets; potted plants usually stay in the small juvenile leaf form
Pumpkin (Cucurbita pepo, C. maxima, C. moschata)CucurbitaceaeHerbaceous vine; warm-season annualFruit (pepo); seeds (pepitas)Seed after frostLong, warm season; monoecious, bees (squash bees); cure before storageSquash bug; squash vine borer; cucumber beetles; powdery mildewSquash was among the first domesticated plants in the Americas (Mexico, about 10,000 years ago); giant pumpkins are C. maxima; one of the Three Sisters; Illinois leads U.S.
Quinoa (Chenopodium quinoa)AmaranthaceaeHerbaceous; cool-season annualSmall dry fruit (achene), used as a pseudocerealSeedTolerates cold, salt, drought and high altitudeDowny mildew (Peronospora variabilis)Bitter saponins in the outer layers (pericarp and seed coat) are washed off; complete protein (all essential amino acids); origin Andes (Bolivia, Peru)
Radish (Raphanus sativus)BrassicaceaeHerbaceous; cool-season annual (daikon types biennial)Storage organ = swollen hypocotyl plus upper taprootSeed, direct-sownFastest common crop (about 3 to 4 weeks); LD, bolts in summer; gets pithy if left too longFlea beetles; cabbage root maggotOften sown with slow carrots to mark rows; daikon used as "tillage radish" cover crop
Raspberry (Rubus idaeus, red; R. occidentalis, black)RosaceaePerennial crown with biennial canesAggregate fruit of drupelets; pulls off the receptacle (hollow)Suckers (red); tip layering (black and purple)Summer-bearing types fruit on floricanes (2nd-year canes); fall-bearing (primocane) types fruit on 1st-year canes; trellis; self-fruitfulPhytophthora root rot; cane blights; anthracnose; spotted wing drosophila; virusesRemove canes after they fruit
Redbud, eastern (Cercis canadensis)FabaceaeDeciduous understory tree; perennialOrnamental (pink-purple flowers before leaves)Seed (scarify and cold-stratify); graftingSun to part shadeVerticillium wilt; Botryosphaeria cankerFlowers on old wood and trunk (cauliflory); heart-shaped leaves; a legume that does not form root nodules; Oklahoma state tree
Rhubarb (Rheum × hybridum)PolygonaceaeHerbaceous perennialPetioles (leaf stalks); leaf blades are toxic (oxalic acid)Division of crowns (each piece with a bud)Needs winter cold (dormancy below about 40 °F); harvest in spring from the 2nd or 3rd year; remove flower stalksCrown rot; rhubarb curculioBotanically a vegetable, but a 1947 U.S. customs ruling classed it as a fruit
Rice (Oryza sativa, Asian; O. glaberrima, African)PoaceaeSemi-aquatic grass; annualGrain (caryopsis); brown rice keeps the bran, white rice is milled endospermSeed: direct-seeded or transplanted into flooded paddiesWarm, wet; flooding controls weeds; most cultivars SDRice blast (Magnaporthe oryzae); bacterial blight; sheath blight; brown planthopperC3; aerenchyma carries O2 to roots; bakanae ("foolish seedling") disease led to discovery of gibberellin; IR8 semi-dwarf of the Green Revolution; Golden Rice (beta-carotene in the endosperm); first crop genome sequenced; feeds over half the world
Rose (Rosa spp. and hybrids)RosaceaeWoody shrub or climber; perennialOrnamental (flowers; top U.S. cut flower); rose hips (accessory fruit, vitamin C)T-budding onto rootstocks ('Dr. Huey', R. multiflora); own-root cuttingsFull sun (6+ hr); good air circulation; DNBlack spot (Diplocarpon rosae); powdery mildew; rose rosette virus (eriophyid mites); Japanese beetles"Thorns" are prickles (epidermal outgrowths); Colombia and Ecuador supply most U.S. cut roses; U.S. national flower
Rosemary (Salvia rosmarinus)LamiaceaeEvergreen woody shrub; perennialLeaves (needle-like)CuttingsFull sun; well-drained; drought-tolerant; hardy only to about zone 7 or 8Root rot; powdery mildew; spittlebugsMoved from Rosmarinus to Salvia in 2017; Mediterranean
Rubber tree, Pará (Hevea brasiliensis)EuphorbiaceaeTropical tree; perennialLatex from laticifers in the bark (tapped)Budding onto seedling rootstocksHumid tropicsSouth American leaf blight (Pseudocercospora ulei) prevents Amazon plantationsSeeds taken from Brazil (Wickham, 1876) via Kew founded Southeast Asian plantations; Thailand and Indonesia lead; latex is cis-polyisoprene; houseplant "rubber plant" is Ficus elastica
Rutabaga (Brassica napus, Napobrassica group)BrassicaceaeHerbaceous; biennial grown as annualStorage root plus hypocotyl ("neck")SeedLong, cool season; stores wellCabbage root maggot; clubrootA turnip × cabbage cross (same species as canola); yellow flesh
Rye (Secale cereale)PoaceaeGrass; cool-season annual (winter rye)Grain (caryopsis); cover cropSeedThe most winter-hardy cereal; poor, acid, sandy soilsErgot (Claviceps purpurea)Cross-pollinated (self-incompatible), so ergot is common; ergotism ("St. Anthony's fire"); allelopathic cover crop; triticale = wheat × rye
Saffron (Crocus sativus)IridaceaeMonocot corm; perennialDried stigmas (3 per flower)Cormels only (sterile triploid)Plant corms in late summer; blooms in fall; hot dry summersCorm rots; rodentsMost expensive spice; about 150 flowers per gram; crocin color, safranal aroma; Iran grows about 90%
Sage (Salvia officinalis)LamiaceaeWoody subshrub; perennialLeavesCuttings; layering; seedFull sun; well-drainedRoot rot; powdery mildewSquare stems; Mediterranean
Sesame (Sesamum indicum)PedaliaceaeHerbaceous; warm-season annualSeeds (oil, food)SeedHot; drought-tolerantPhyllody (phytoplasma); leaf spotsCapsules shatter open when ripe (often linked to "open sesame"), so non-shattering cultivars help machine harvest; one of the oldest oilseeds; allergen
Sisal (Agave sisalana)AsparagaceaeSucculent monocot rosette; perennialLeaf fibers (hard fiber for twine, rope)Bulbils; suckersArid tropicsAgave weevilCAM; Brazil and Tanzania lead; henequen (A. fourcroydes) is a related fiber
Snake plant (Dracaena trifasciata, formerly Sansevieria)AsparagaceaeSucculent rhizomatous monocot; perennial houseplantOrnamental (foliage)Division; leaf cuttings (yellow-edged 'Laurentii' reverts to plain green from leaf cuttings)Low light; drought-tolerantRoot rot from overwatering; mealybugsCAM; West Africa
Snapdragon (Antirrhinum majus)PlantaginaceaeHerbaceous tender perennial grown as cool-season annualOrnamental (bedding, cut flower)Seed (needs light); cuttingsCool; tolerates light frostSnapdragon rust (Puccinia antirrhini); botrytis; downy mildewZygomorphic two-lipped flowers opened by bumblebees; model for flower development (ABC model) and peloric mutants
Sorghum (Sorghum bicolor)PoaceaeGrass; warm-season annualGrain (caryopsis); sweet stalk syrup; forage; broomcornSeedVery drought- and heat-tolerant (waxy bloom, rolls leaves, can go dormant); SDSugarcane aphid; anthracnose; head smut; ergotC4; young or drought-stressed plants contain dhurrin, releasing prussic acid (HCN) that poisons livestock; origin northeastern Africa; Kansas leads U.S.
Soybean (Glycine max)FabaceaeHerbaceous; warm-season annualSeeds (about 20% oil, 40% protein); immature pods as edamameSeedSD (cultivars in maturity groups by latitude); self-pollinatedSoybean cyst nematode (top U.S. yield robber); sudden death syndrome; Asian soybean rust; soybean aphidMost common GM crop (glyphosate-tolerant, 1996); nodules with Bradyrhizobium japonicum; C3; origin northeastern China; U.S. and Brazil lead; tofu, oil, feed
Spider plant (Chlorophytum comosum)AsparagaceaeHerbaceous monocot perennial with tuberous roots; houseplantOrnamental (foliage)Plantlets on stolons; divisionBright indirect light; tolerantLeaf-tip burn from fluoride and salts; scaleNon-toxic to pets; South Africa
Spinach (Spinacia oleracea)AmaranthaceaeHerbaceous; cool-season annualLeavesSeed, direct-sown in early spring or fallFrost-hardy; LD, bolts quickly as days lengthen and warmDowny mildew (blue mold, Peronospora effusa); leaf miners; aphidsDioecious (some monoecious); oxalates bind calcium and iron; C3; origin Persia
Squash, summer (Cucurbita pepo: zucchini, yellow, pattypan)CucurbitaceaeHerbaceous bush or vine; warm-season annualImmature fruit (pepo), picked at about 6 to 8 in.Seed after frostFrost-tender; monoecious (male flowers first); bees; pick every 1 to 2 daysSquash vine borer; squash bug; powdery mildew; cucumber beetlesFlowers are edible; same species as acorn squash and many pumpkins
Squash, winter (Cucurbita maxima, C. moschata, C. pepo)CucurbitaceaeHerbaceous vine; warm-season annualMature fruit (pepo) with a hard rindSeed after frostLong, warm season; harvest mature and cure about 1 to 2 weeks warm before storingSquash vine borer (butternut, C. moschata, resists it); squash bug; powdery mildewButternut (C. moschata), Hubbard (C. maxima), acorn (C. pepo); stores for months
Strawberry (Fragaria × ananassa)RosaceaeHerbaceous perennialAggregate accessory fruit: enlarged fleshy receptacle with achenes on the surfaceRunners (stolons) with daughter plants; tissue culture for clean stockFull sun; June-bearing (SD), everbearing and day-neutral cultivars; matted rows or annual plasticulture; renovate June-bearers after harvestGray mold (Botrytis cinerea); tarnished plant bug; spotted wing drosophila; slugs; Verticillium wiltOctoploid hybrid of F. virginiana (North America) × F. chiloensis (Chile), made in France in the 1700s; non-climacteric; California grows about 90% of U.S. crop
Sugar beet (Beta vulgaris, Altissima group)AmaranthaceaeHerbaceous; biennial grown as annualStorage root (sucrose about 16 to 20%)Seed (monogerm seed avoids thinning)Cool, temperateCercospora leaf spot; rhizomania (virus spread by a soil protist); beet cyst nematodeSupplies roughly 20% of world sugar; developed in Prussia (1700s) and promoted by Napoleon; most U.S. sugar beets are GM herbicide-tolerant
Sugarcane (Saccharum officinarum and hybrids)PoaceaeTall tropical grass; perennialStem (culm) juice, sucrose stored in parenchymaStem cuttings ("setts") with nodes and buds; ratoon crops regrow from stubbleTropical and subtropical; frost-tender; long seasonRed rot; smut; sugarcane borer; mosaic virusC4, among the most productive crops; about 80% of world sugar; bagasse burned for fuel; Brazil makes cane ethanol; origin New Guinea
Sunflower (Helianthus annuus)AsteraceaeHerbaceous; warm-season annualFruit (cypsela, the "seed"), for oil and snacksSeedFull sun; drought-tolerant with a deep taprootSunflower moth; downy mildew; Sclerotinia head rotHead (capitulum) of ray and disk florets in Fibonacci spirals; young heads track the sun, mature heads face east; allelopathic; native to North America; Kansas state flower
Sweet pea (Lathyrus odoratus)FabaceaeHerbaceous tendril vine; cool-season annualOrnamental (fragrant cut flowers)Seed (nick or soak)Cool; sow early; LDPowdery mildew; aphidsSeeds toxic (lathyrism); Bateson and Punnett discovered gene linkage in sweet pea (1905); not edible like garden pea
Sweet potato (Ipomoea batatas)ConvolvulaceaeHerbaceous vine; perennial grown as warm-season annualStorage (tuberous) root, a true rootSlips (sprouts grown from bedded roots)Hot, sandy soil; frost-tender; about 90 to 120 days; cure about 85 °F and high humidity for about a week (heals wounds, sweetens)Sweet potato weevil; root-knot nematodes; black rot; scurfNot a true yam; origin Central and South America; North Carolina leads U.S.; its genome naturally carries Agrobacterium DNA
Taro (Colocasia esculenta)AraceaeHerbaceous monocot; perennialCorm; leaves cookedHuli (corm top with leaf-stalk bases); cormelsTropical; flooded paddies or uplandTaro leaf blight (Phytophthora colocasiae)Raw tissue has irritating calcium oxalate raphides, so it is always cooked; Hawaiian poi; ornamental "elephant ears"
Tea (Camellia sinensis)TheaceaeEvergreen shrub kept pruned to a "plucking table"; perennialYoung leaves and buds ("two leaves and a bud")Cuttings; seedAcid soil (pH about 4.5 to 5.5); humid subtropics and tropical highlandsBlister blight (Exobasidium vexans); tea mosquito bug; red spider miteBlack tea fully oxidized ("fermented"), oolong partly, green unoxidized (heated quickly); caffeine, theanine, catechins; origin southwestern China; China the top producer
Thyme (Thymus vulgaris)LamiaceaeWoody subshrub; perennialLeavesCuttings; layering; divisionFull sun; dry, well-drainedRoot rot in wet soilThymol is antiseptic; Mediterranean
Tobacco (Nicotiana tabacum)SolanaceaeHerbaceous; annual in culture (perennial in the tropics)Leaves (cured: flue-, air-, fire- or sun-cured)Tiny seed, grown as float-bed transplantsWarm; "topping" (removing flowers) and removing suckers send more growth to leavesTobacco mosaic virus; blue mold (Peronospora tabacina); black shank; tobacco hornwormNicotine is made in the roots and moved to leaves (a natural insecticide); TMV was the first virus discovered; 'Maryland Mammoth' led to the discovery of photoperiodism (1920); among the first transgenic plants; origin South America
Tomatillo (Physalis philadelphica)SolanaceaeHerbaceous; warm-season annualFruit (berry) inside an inflated papery calyx (husk)Seed, transplantedFrost-tender; self-incompatible, so plant at least twoFlea beetles; Colorado potato beetleSalsa verde; origin Mexico
Tomato (Solanum lycopersicum)SolanaceaeHerbaceous perennial grown as warm-season annual; determinate (bush) or indeterminate (vine)Fruit (berry); legally a vegetable (U.S. Supreme Court, 1893)Seed, started indoors and transplanted deep (stems form adventitious roots); suckers root as cuttings; grafted onto resistant rootstocksFrost-tender; full sun; self-pollinating (vibration helps); fruit set fails with hot days above about 90 °F, nights above about 72 °F or nights below about 55 °F; stake or cageBlossom-end rot (calcium, uneven watering); early blight (Alternaria); late blight; Septoria leaf spot; Fusarium and Verticillium wilts ("VFN" resistance codes); hornwormsDN; C3; climacteric (ethylene ripening); Flavr Savr (1994) was the first commercial GM food; avoid planting near black walnut (juglone) or potatoes; leaves contain tomatine; origin Andes, domesticated in Mexico
Tulip (Tulipa hybrids)LiliaceaeMonocot bulb (tunicate); perennial, often treated as annualOrnamental (spring flowers; cut flower)Offset bulbs; seed takes years to bloomPlant in fall 6 to 8 in. deep; needs about 12 to 16 weeks of cold (pre-chilled bulbs in the South)Tulip breaking virus (aphids); tulip fire (Botrytis tulipae); squirrels and deerVirus-striped "broken" tulips fueled Dutch tulip mania (1630s); origin Central Asia and Turkey; Netherlands leads production; blooms in early spring
Turmeric (Curcuma longa)ZingiberaceaeHerbaceous monocot; perennialRhizome (yellow curcumin)Rhizome pieces (seldom sets seed)Hot, humid tropics; part shadeRhizome rot; leaf blotchIndia grows most of the world's crop; ginger family
Turnip (Brassica rapa, Rapifera group)BrassicaceaeHerbaceous; biennial grown as cool-season annualStorage organ (swollen hypocotyl and taproot); leaves (greens)SeedCool-season; spring or fallCabbage root maggot; flea beetles; clubrootSame species as Napa cabbage and bok choy
Vanilla (Vanilla planifolia)OrchidaceaeClimbing epiphytic monocot vine; perennialCured fruit (capsule, the "bean")Stem cuttingsHumid tropics; partial shade; support treesFusarium root and stem rotFlowers are hand-pollinated (method found by Edmond Albius, Réunion, 1841); curing forms vanillin; native to Mexico; Madagascar grows most; CAM
Walnut (Juglans regia, English or Persian; J. nigra, black)JuglandaceaeDeciduous tree; perennialSeed of a drupe-like nut (hard shell inside a green husk); black walnut timberGrafted onto black walnut or 'Paradox' hybrid rootstockFull sun; monoecious, wind-pollinated (male and female flowers mature at different times)Walnut blight (Xanthomonas); codling moth; walnut husk fly; thousand cankers disease (black walnut)Roots and husks release juglone, which harms tomatoes, potatoes, apples and azaleas (allelopathy); California grows nearly all U.S. English walnuts
Watermelon (Citrullus lanatus)CucurbitaceaeHerbaceous vine; warm-season annualFruit (pepo)Seed or transplants; grafted onto gourd or squash rootstocks to resist soil diseaseLong, hot season; sandy soil; monoecious, bees; ripe when the ground spot turns yellow and the nearest tendril driesFusarium wilt; anthracnose; gummy stem blight; cucumber beetlesSeedless types are triploid (tetraploid × diploid) and need diploid pollinizer rows; non-climacteric; lycopene; origin northeastern Africa
Wheat (Triticum aestivum, bread; T. turgidum subsp. durum, pasta)PoaceaeGrass; cool-season annual (winter wheat needs vernalization; spring wheat does not)Grain (caryopsis, "wheat berry"); flour is ground endospermSeed (drilled)Winter wheat sown in fall, harvested early summer; LD; self-pollinatingStem rust (Puccinia graminis, alternate host barberry; race Ug99); leaf and stripe rusts; Fusarium head blight (scab); Hessian flyBread wheat is hexaploid, durum tetraploid; C3; gluten proteins (gliadin, glutenin) in the endosperm; Borlaug's semi-dwarf cultivars drove the Green Revolution; domesticated in the Fertile Crescent; Kansas (winter wheat) and North Dakota (spring and durum) lead U.S.
Willow (Salix alba, white; S. babylonica, weeping; others)SalicaceaeDeciduous tree or shrub; perennialBark (salicin, the model for aspirin); flexible stems (wicker, osier); biomassHardwood cuttings (root very easily, even stuck in wet soil)Wet soils, full sun; fast-growingWillow scab; cankers; aphidsDioecious catkins; "willow water" is a traditional homemade rooting aid
Wisteria (Wisteria sinensis, Chinese; W. floribunda, Japanese; W. frutescens, American)FabaceaeDeciduous woody twining vine; perennialOrnamental (hanging flower clusters, racemes)Grafting; layering; cuttings (seedlings may take many years to flower)Full sun; avoid high-N fertilizer; prune in summer and winterFew serious pests; scaleAsian species invasive in the Southeast; seeds and pods toxic
Yam (Dioscorea rotundata, D. alata and others)DioscoreaceaeHerbaceous monocot vine; perennialTuberSetts (tuber pieces); minisettsTropical; stakingYam mosaic virus; nematodes; anthracnoseWest Africa (Nigeria) grows most of the world's yams; wild Mexican yams supplied diosgenin to make steroid hormones (birth control pill); U.S. "yams" are sweet potatoes
Yew (Taxus baccata, English; T. brevifolia, Pacific; T. × media)TaxaceaeEvergreen conifer shrub or tree; perennialOrnamental hedges; bark and needles yield paclitaxel (Taxol)Cuttings; seedShade-tolerant; needs good drainageRoot rot in wet soil; taxus weevilSeeds sit in a red fleshy aril; the aril is the only non-toxic part (taxine alkaloids); paclitaxel treats ovarian and breast cancer; dioecious
Zinnia (Zinnia elegans)AsteraceaeHerbaceous; warm-season annualOrnamental (flower heads; cut flower)Seed, direct-sown (easy)Full sun; heat-loving; frost-tenderPowdery mildew; Alternaria and bacterial leaf spotsOrigin Mexico; first flowering plant grown in NASA's Veggie unit on the International Space Station (2016)

Genetically modified organisms

A GMO carries DNA changed with genetic engineering rather than by crossing alone; a plant carrying a gene from another species is transgenic. Genetic engineering can make targeted changes in a few years that traditional breeding might take decades to achieve, and it can move genes between unrelated species (bacterial genes into plants, for example).

Agrobacterium-mediated transformation. Agrobacterium tumefaciens, the soil bacterium that causes crown gall, naturally inserts a piece of its Ti (tumor-inducing) plasmid, a large circle of DNA separate from the bacterial chromosome, into plant chromosomes. That transferred DNA (T-DNA) carries genes that make the plant cells overproduce auxin and cytokinin (so they grow into a tumor) and make opines, unusual compounds built from amino acids plus keto acids or sugars that only the bacterium can use as food. The plasmid's vir (virulence) genes do the cutting and transfer. Engineers "disarm" the plasmid by removing the tumor and opine genes and put in the gene of interest (with a promoter that controls where it is expressed) plus a selectable marker (an antibiotic- or herbicide-resistance gene) so transformed cells can be picked out. Transformed cells are regenerated into whole plants by tissue culture. Limits: it works best on dicots and some species resist infection, the T-DNA lands at random sites in the genome (which can disrupt or alter the expression of the plant's own genes), and tissue culture can introduce unwanted mutations. The vir genes are switched on by phenolic compounds such as acetosyringone that leak from wounded plant cells, which is why wounding (or adding acetosyringone) starts transformation.

Biolistics (the gene gun) fires microscopic (about 1 µm) gold or tungsten particles coated with the DNA of interest into plant cells. It works on almost any species, including grasses and even chloroplast genomes, but it damages tissue and often inserts many broken copies at random sites. Restriction enzymes cut DNA at specific sequences and DNA ligase joins fragments; PCR copies DNA. Newer gene editing (CRISPR-Cas9) makes targeted changes to a plant's own genes, often without adding foreign DNA, and RNA interference silences a gene.

Crop or traitWhat was changedPurpose
First transgenic plant (1983)Tobacco with an antibiotic-resistance geneProof of concept
Flavr Savr tomato (1994)An antisense copy of the polygalacturonase gene, reducing the enzyme that softens fruitFirst commercial GM food; the first plant through the FDA's consultation program; longer shelf life
Bt corn, cotton (and potato, eggplant)A Bacillus thuringiensis Cry protein gene (Cry1Ab and others; Cry3A in Bt potato)Insect resistance
Herbicide-tolerant (Roundup Ready) soybean, corn, cotton, canolaA glyphosate-insensitive EPSP synthase (EPSPS) from a bacteriumWeed control with glyphosate
Rainbow papaya (Hawaii, 1998)A papaya ringspot virus coat-protein geneVirus resistance; saved Hawaii's papaya industry
Golden RiceGenes for β-carotene synthesis (psy from a plant, crtI from a bacterium) driven by endosperm-specific promotersProvitamin A (the pigment that colors carrots orange) in the grain, against vitamin A deficiency
Arctic apple, Innate potatoRNA interference silencing polyphenol oxidase (and, in the potato, asparagine synthetase)Non-browning flesh; less bruising and less acrylamide in fried potatoes

Bt proteins are made as inactive crystals; in the alkaline gut of a susceptible insect they are activated, bind receptors in the midgut lining and punch pores that kill the insect. Each Cry protein targets a group: Cry1 proteins kill caterpillars (Lepidoptera, such as the European corn borer and cotton bollworm), Cry3 proteins kill beetles (Colorado potato beetle, corn rootworm). Mammals have an acidic stomach and lack the receptors. Insects evolve resistance (often through mutations in those midgut receptors), so growers plant non-Bt refuges that keep susceptible insects in the population. In 1999 a Cornell laboratory study reported that Bt corn pollen dusted on milkweed harmed monarch caterpillars, setting off the "Bt corn controversy"; later field studies found the real-world risk to monarchs was low.

Glyphosate (Roundup) kills plants by blocking EPSPS, an enzyme of the shikimate pathway that plants (but not animals) use to make aromatic amino acids. Herbicides are selective (kill some plants and spare others: 2,4-D and MCPA, synthetic auxins that kill broadleaf weeds in grass crops; atrazine, a photosystem II blocker that corn tolerates) or nonselective (kill nearly all green plants: glyphosate; paraquat, which steals electrons from photosystem I).

Regulation in the United States is shared: the USDA (APHIS) regulates GM plants as potential plant pests, the EPA regulates pesticidal traits such as Bt proteins and herbicide use, and the FDA reviews food safety. The Supreme Court case Diamond v. Chakrabarty (1980) held that a genetically engineered bacterium, a living organism made by people, can be patented (later cases extended this to plants). Soybeans are the most widely grown GM crop worldwide; corn, cotton and canola follow. Large-scale U.S. planting began in 1996 with Bt corn and Roundup Ready soybeans (Bt potatoes and cotton arrived about the same time), and adoption was fast: today more than 90% of U.S. corn, soybean and cotton acreage is genetically engineered. By crop, roughly 95% of soybean and cotton acreage and over 90% of corn acreage are GE (mostly herbicide-tolerant, insect-resistant or both). Most GM crops carry only one or a few added genes, often "stacked" traits combined by crossing. The first wave of GM foods reaching U.S. shoppers included corn, soybeans, papaya, tomatoes, potatoes and squash. GM varieties grown commercially in the United States today include corn, soybeans, cotton, canola, sugar beets, alfalfa, papaya, summer squash, potatoes and apples; there are no GM avocados, and tomatoes are essentially absent from GM production (the Flavr Savr was withdrawn in the 1990s; a purple, anthocyanin-rich GM tomato went on sale in 2024 only on a small scale). The FDA completed its safety consultation on Golden Rice in 2018, and the Philippines approved it for planting in 2021 (a 2024 court order there halted commercial planting); a 2008 feeding trial on children in China drew heavy criticism over consent. Thousands of studies have examined the safety of GM crops, and major scientific bodies have found approved GM foods as safe to eat as their conventional counterparts. Plants are also engineered as factories (molecular farming): the first pharmaceutical proteins made in transgenic plants (a human growth hormone fusion in tobacco in 1986 and human serum albumin in 1990) were followed by commercial products such as avidin from corn and an enzyme drug for Gaucher disease made in carrot cells, approved in 2012.

Because most corn, soybeans, canola and sugar beets grown in the U.S. are GM, ingredients derived from them (corn syrup, soybean oil and lecithin, canola oil, beet sugar) are in an estimated 70 to 80% of U.S. packaged foods; since 2022 U.S. law requires a "bioengineered" disclosure on qualifying foods. The common concerns are pest and weed resistance (insects evolving tolerance to Bt, glyphosate-resistant weeds), gene flow (transgenes can and do escape into wild or weedy relatives by cross-pollination), effects on non-target organisms, unintended changes from random insertion, labeling, and corporate control and patenting of seed. The benefits claimed are higher yields, less insecticide spraying, easier no-till weed control, virus resistance, better nutrition and less food waste. Tests often ask for one benefit and one risk, so prepare both.

Plant diseases and nutrient deficiencies

Infections

Disease needs three things together, the disease triangle: a susceptible host, a virulent pathogen and a favorable environment (often warm, wet weather or crowded, poorly ventilated plants). Remove any one and the disease stops, which is the logic behind most control methods (resistant varieties, sanitation, crop rotation, adjusting watering and spacing). Biotic (infectious) diseases are caused by living pathogens; abiotic disorders by the environment: nutrient deficiencies or excesses, drought, flooding, extreme heat or cold (frost, sunscald), salt, air pollution, herbicide drift and mechanical injury.

To prove that a microbe causes a plant disease, pathologists follow Koch's postulates: (1) the microbe is found in every diseased plant; (2) it is isolated and grown in pure culture; (3) the pure culture, inoculated into a healthy plant, causes the same disease; (4) the same microbe is re-isolated from that plant. Obligate parasites such as rusts, powdery mildews and viruses cannot be grown in pure culture, so the postulates are adapted for them.

To tell them apart in the field: biotic diseases usually affect one host species or family, start in patches and spread over days to weeks, and may show signs, the pathogen itself (fungal threads or spores, bacterial ooze, nematode cysts, mushroom-like fruiting bodies). Abiotic problems tend to appear suddenly across a whole area or across many species at once, in a uniform pattern linked to an event (a frost, a spill, a drought), and do not spread from plant to plant. Symptoms are the plant's responses; signs are the pathogen.

Symptom wordMeaning
ChlorosisYellowing from lost chlorophyll
NecrosisDead, brown tissue
WiltDrooping from lost turgor, often because the xylem is blocked
BlightRapid browning and death of leaves, shoots or whole plants
CankerSunken dead area on a stem, branch or trunk, often oozing
Leaf spotDistinct dead lesions, often with dark edges or yellow halos
GallAbnormal swelling or overgrowth
MosaicMottled light and dark green patches (typical of viruses)
RotBreakdown of tissue (soft rots, root rots)
Damping-offSeedlings collapse at the soil line
Mildew, rust, smut, scabPowdery coatings, rusty pustules, black sooty spore masses, rough corky lesions
Stunting, dieback, witches'-broomReduced growth; shoots dying back from the tip; dense clusters of twigs
Pathogen groupHow it worksWhat to know
FungiSpread by spores (wind, rain splash, insects, tools); enter through stomata, wounds or directly through the cuticleCause most plant diseases (the large majority of infectious ones): rusts, smuts, mildews, wilts, blights, rots, leaf spots
Oomycetes (water molds)Fungus-like, but related to brown algae; cellulose walls; swimming spores, so they love wet conditionsLate blight, damping-off (Pythium), downy mildews, sudden oak death
BacteriaEnter through wounds and natural openings (stomata, hydathodes); spread by rain, insects, toolsSoft rots, wilts, galls, cankers, leaf spots, fire blight; insect-borne phloem bacteria and phytoplasmas cause yellows diseases
VirusesMostly RNA genomes; cannot cross the cell wall on their own, so they enter through wounds or are carried by vectors (aphids, whiteflies, thrips, leafhoppers, nematodes), grafts, seed or pollen; move cell to cell through plasmodesmataMosaics, ring spots, leaf curl, stunting; no cure once infected, so control vectors and use resistant or virus-free stock. Viroids are even smaller, naked RNA circles (potato spindle tuber)
NematodesMicroscopic roundworms that feed with a needle-like styletRoot-knot nematodes make galls on roots, leaving plants stunted, wilted and chlorotic; cyst nematodes; beech leaf disease
Parasitic plantsHaustoria tap the hostDodder, mistletoe, witchweed (Striga)
ReferencePlant diseases to know· 31 rows
31 rows
DiseaseCauseWhat to know
Late blight of potato and tomatoOomycete, Phytophthora infestansCaused the Irish potato famine (1845-1849); dark, water-soaked lesions; not a true fungus
Damping-offPythium, Rhizoctonia and other soil organismsSeedlings rot at the soil line and topple; prevent with sterile mix, drainage and not overwatering
Downy mildewOomycetesYellow patches on top of leaves with fuzzy gray-purple growth underneath, in cool wet weather
Powdery mildewFungiWhite powdery coating on leaf surfaces; favored by humid nights and dry leaves, crowding and shade
AnthracnoseFungi (Colletotrichum and others)Dark, sunken lesions on leaves, stems and fruit
Black stem rust of wheatFungus, Puccinia graminis (kingdom Fungi, order Pucciniales)Rust-red pustules; its alternate host is barberry; the strain Ug99 threatens wheat worldwide
Coffee leaf rustFungus, Hemileia vastatrixDevastated Central and South American coffee in an epidemic that began in 2012
White pine blister rustFungusAlternates between five-needle pines and currants and gooseberries (Ribes), which were once banned in many states
Corn smutFungus, Ustilago maydisSwollen gray galls full of black spores on ears; eaten as huitlacoche in Mexico
ErgotFungus, Claviceps purpureaHard dark sclerotia replace rye grains; its alkaloids cause ergotism (St. Anthony's fire) and are the starting point for LSD
Dutch elm diseaseFungus spread by elm bark beetlesThe fungus clogs xylem, so the crown wilts; managed by sanitation (pruning out and burning infected wood), breaking root grafts, fungicide injections and resistant elms
Chestnut blightFungus, Cryphonectria parasiticaCankers girdled and wiped out the American chestnut as a canopy tree after its arrival around 1904
Oak wilt; sudden oak deathFungus spread by sap beetles and root grafts; oomycete Phytophthora ramorumKill oaks; red oaks die fastest
Fusarium and Verticillium wiltsSoil fungiInvade roots and plug xylem; attack tomatoes, potatoes, peppers, eggplant, brambles and many others; survive in soil for years, so rotate away from susceptible crops for several years
Panama disease of bananaFungus, Fusarium oxysporum f. sp. cubenseWiped out the Gros Michel banana; a new strain (TR4) threatens the clonal Cavendish
ClubrootPlasmodiophora brassicae (a protist)Swollen, distorted roots of cabbage-family crops; favored by acidic soil, controlled by liming
Apple scab; brown rotFungiCorky olive spots on apples; brown rot mummifies stone fruits
Fire blightBacterium, Erwinia amylovoraApples and pears: shoots look scorched and curl into a "shepherd's crook"; spread by bees and rain; prune well below cankers and disinfect tools. Native to North America (first reported in New York's Hudson Valley in 1780); Thomas Burrill showed in the 1870s-1880s that a bacterium causes it, the first plant disease proven to be bacterial
Bacterial canker of stone fruitsBacterium, Pseudomonas syringaeSunken, oozing, gummy cankers on cherry, plum and peach
Crown gallBacterium, Agrobacterium tumefaciensTumor-like galls at the soil line; the same bacterium is used to make GMOs
Bacterial wilt of cucurbitsBacterium spread by cucumber beetlesSudden wilting of cucumbers and melons
Pierce's disease of grapesBacterium, Xylella fastidiosa, spread by sharpshooter leafhoppersClogs the xylem, scorching leaves and killing vines; the same bacterium kills olive trees in Italy
Citrus greening (huanglongbing)Phloem bacterium spread by the Asian citrus psyllidThe most destructive citrus disease; lopsided, bitter fruit
Tobacco mosaic virusVirusMottled light and dark leaves; the first virus ever identified (1890s); spread by touch, tools and even tobacco products
Tomato spotted wilt; cucumber mosaicVirusesSpread by thrips and aphids respectively
Tomato yellow leaf curlA geminivirus (a DNA virus) spread by the whitefly Bemisia tabaciYellow, upcurled, crumpled leaves and stunted, barren plants
Bacterial soft rotPectobacterium carotovorum (formerly Erwinia carotovora)Enzymes dissolve pectin, turning potatoes, carrots and other fleshy organs into foul-smelling mush
Papaya ringspotVirus spread by aphidsControlled by GM Rainbow papaya
Beech leaf diseaseA foliar nematodeFirst found in northeastern Ohio in 2012; dark bands between leaf veins; spreading through the northeastern U.S. and Ontario
Southern corn leaf blight (1970)FungusSwept through U.S. corn that shared the susceptible Texas male-sterile cytoplasm
Root-knot nematodeNematodes (Meloidogyne)Swollen galls on roots of tomatoes, peppers and many crops; stunting and wilting; marigolds suppress them

Plant virus families tests name: Potyviridae (the largest family of plant RNA viruses; potato virus Y, papaya ringspot, turnip mosaic; aphid-borne), Bromoviridae (cucumber mosaic, alfalfa mosaic), Virgaviridae (tobacco mosaic), Geminiviridae (DNA viruses carried by whiteflies and leafhoppers) and Tospoviridae (tomato spotted wilt, carried by thrips). Insect pests matter twice, as direct damage and as vectors. By feeding style: defoliators chew leaves (caterpillars such as hornworms and spongy moth larvae, Japanese beetles), borers tunnel into stems and wood (emerald ash borer, squash vine borer, bark beetles), leaf miners tunnel between the upper and lower leaf surfaces, root feeders attack roots (grubs, corn rootworm), and sap-suckers pierce and drink (aphids, whiteflies, scale, leafhoppers, psyllids). Thrips rasp leaf and petal surfaces and suck the contents, leaving silvery or white stippled patches dotted with tiny black fecal specks (and they spread tomato spotted wilt virus). Scale insects are among the hardest pests to control because adults hide under a waxy or armored shell that sprays cannot penetrate; the crawling young are the vulnerable stage. Whiteflies swarm from the undersides of tobacco, tomato and greenhouse plants. Spider mites are tiny arachnids, not insects; they hide under leaves and cause stippled, yellowing, curling leaves with fine webbing in hot, dry weather. By sucking out leaf cells they cut photosynthesis, and heavy infestations cause leaf drop and smaller crops the next year in orchards such as almonds. Tomatoes alone host aphids, whiteflies, spider mites, mealybugs (in greenhouses), thrips, hornworms, fruitworms and flea beetles. The potato leafhopper feeds on potatoes, beans and alfalfa; its toxic saliva causes hopperburn, a V-shaped yellowing and then browning that starts at leaf tips. The Colorado potato beetle strips the foliage of nightshade-family crops, especially potatoes and eggplants, and also tomatoes and sometimes peppers.

How plants defend themselves. Preformed barriers come first: cuticle, bark, cell walls and antimicrobial chemicals. Plants then recognize pathogens in two layers. Pattern-triggered immunity (PTI) uses surface receptors for common microbial molecules such as bacterial flagellin or fungal chitin; effector-triggered immunity (ETI) uses resistance (R) proteins that recognize a specific pathogen effector, giving strong, race-specific resistance (the gene-for-gene model) that often ends in the hypersensitive response. Defenses include the hypersensitive response (cells around the infection site kill themselves, walling the pathogen off in a small dead spot), phytoalexins (antimicrobial compounds made after infection), pathogenesis-related proteins (chitinases and glucanases that attack fungal walls), wall fortification with callose and lignin, tyloses and gums that plug infected xylem, and RNA silencing against viruses. Salicylic acid then spreads a signal that primes the whole plant (systemic acquired resistance), while jasmonic acid and ethylene coordinate defenses against chewing insects and rotting pathogens. Trees compartmentalize decay behind chemical and anatomical walls instead of healing it. Some resistance comes from losing a gene the pathogen needs: recessive mlo mutations give barley (and other crops) broad, durable resistance to powdery mildew.

Control combines cultural methods (resistant varieties, crop rotation, sanitation and removal of infected material, removing alternate hosts, spacing for airflow, watering the soil rather than the leaves, disinfecting tools), chemical controls (fungicides such as copper sprays and the Bordeaux mixture first used on grape downy mildew in the 1880s, bactericides, insecticides against vectors), biological controls, quarantines against introduced pathogens, and integrated pest management (see Horticulture). Rotations against soil diseases and insects need to keep susceptible crops (and their relatives) out of a field for about three or four years. Wiping powdery mildew off a leaf does not cure it, because the fungus keeps growing and sporulating; it needs pruning for airflow, resistant cultivars or a fungicide. Plants can even be "vaccinated": spraying chemicals that switch on systemic acquired resistance, or pre-infecting with a mild virus strain (cross-protection, used against citrus tristeza and papaya ringspot), gives protection against later infection.

Nutrient deficiencies

Plants need 17 essential elements. An element is essential if the plant cannot complete its life cycle without it, no other element can replace it, and it acts directly in the plant's metabolism. The standard test grows plants in hydroponic solution culture: one group gets a complete nutrient solution and another an identical solution missing the element, and everything else is held constant. Carbon, hydrogen and oxygen come from air and water and make up about 95% of dry mass (oxygen and carbon are each roughly 45%, hydrogen about 6%). The rest come from the soil:

  • Primary macronutrients: nitrogen (N), phosphorus (P) and potassium (K), the three numbers on a fertilizer bag; nitrogen is needed in the largest amount.
  • Secondary macronutrients: calcium (Ca), magnesium (Mg) and sulfur (S).
  • Micronutrients (needed in trace amounts): iron (Fe), manganese (Mn), zinc (Zn), copper (Cu), boron (B), molybdenum (Mo), chlorine (Cl) and nickel (Ni).

The key to diagnosing a deficiency is mobility. A plant can move mobile nutrients out of old leaves into new growth, so a shortage shows in the older, lower leaves first. Immobile nutrients stay where they were first deposited, so a shortage shows in the youngest leaves and growing tips. Chlorosis that appears only on the lower leaves therefore points to a mobile nutrient.

ReferenceNutrient roles and deficiency symptoms· 14 rows
14 rows
NutrientMobilityMain roleDeficiency symptoms
Nitrogen (N)MobileAmino acids and proteins, nucleic acids, chlorophyllUniform yellowing of older leaves while upper leaves stay green; stunting; spindly growth
Phosphorus (P)MobileATP, DNA and RNA backbone, phospholipid membranesDark green leaves with purple or reddish tints (anthocyanin buildup), especially older leaves and stems; poor roots, flowering and fruiting; delayed maturity
Potassium (K)MobileGuard-cell turgor and stomatal control, enzyme activation, water balanceScorched, browning edges (marginal necrosis) on older leaves; weak stalks that fall over (lodging); poor roots; poor disease resistance
Magnesium (Mg)MobileCenter of the chlorophyll molecule; activates enzymes, including RuBisCOYellowing between the veins of older leaves, veins stay green
Calcium (Ca)ImmobileCell walls (calcium pectate in the middle lamella), membranes, signalingDead growing tips; blossom-end rot of tomatoes and peppers; tipburn of lettuce; bitter pit of apples
Sulfur (S)Mostly immobileAmino acids (cysteine, methionine), coenzymesUniform yellowing of young leaves
Iron (Fe)ImmobileChlorophyll synthesis, cytochromes and ferredoxinYellowing between the veins of young leaves, which can turn almost white; common in alkaline soil
Manganese (Mn)ImmobileWater-splitting complex of photosystem II; enzymesInterveinal chlorosis of young leaves, sometimes with small dead spots
Zinc (Zn)ImmobileEnzymes; needed to make tryptophan, the precursor of auxinSmall, narrow leaves ("little leaf"), short internodes and rosettes; delayed spring growth with small, chlorotic terminal buds; in corn, broad white or yellow bands on each side of the midrib of young leaves ("white bud")
Copper (Cu)ImmobilePlastocyanin (photosynthesis), cytochrome c oxidase (respiration), enzymes that build lignin and that detoxify oxygen radicals (Cu/Zn superoxide dismutase)Young leaves dark, twisted or wilted; dieback of tips
Boron (B)ImmobileCell walls (cross-links pectin), cell division, sugar transport, pollen tube growth; linked to calcium use and water uptakeDeath of terminal buds; brittle, distorted, cracked new growth; hollow or corky stems and roots; poor fruit set
Molybdenum (Mo)MobileNitrogenase and nitrate reductaseLooks like nitrogen deficiency; "whiptail" leaves in cauliflower
Chlorine (Cl)MobileWater splitting, osmotic balanceWilting, bronzing (rare in the field)
Nickel (Ni)MobileUrease (breaks down urea)Necrotic leaf tips from urea buildup; "mouse-ear" leaves in pecans

Symptoms look a little different crop by crop. In corn, nitrogen deficiency yellows older leaves in a V running from the tip down the midrib, potassium deficiency browns the leaf margins of older leaves, and zinc deficiency makes pale bands on young leaves. In citrus, magnesium deficiency gives older leaves a yellow band with a green, inverted-V wedge at the base, zinc deficiency gives small, mottled young leaves, and iron deficiency gives yellow young leaves with green veins. Acid-loving blueberries, azaleas and pin oaks show iron chlorosis whenever the soil is too alkaline.

Soil pH controls availability: most nutrients are easiest to absorb in slightly acidic to neutral soil (about pH 6 to 7). Iron, manganese, zinc and phosphorus become scarce in alkaline soil, so before adding iron to a chlorotic plant, test the pH: if it is high, the iron already in the soil cannot be absorbed. Fix iron chlorosis by lowering the pH (sulfur, acidifying fertilizer) or applying chelated iron to the soil or as a foliar spray. In very acidic soil, aluminum and manganese become soluble and toxic and calcium, magnesium and molybdenum become scarce. Too much fertilizer is its own disorder: salt buildup pulls water out of roots and burns leaf margins.

Division C topics

Horticulture and aquaculture

Horticulture (Latin hortus, garden, + cultura, cultivation) is the science and art of growing fruits, vegetables, flowers and ornamental plants, usually intensively and on a small area per plant. Agronomy covers field crops grown over large areas (wheat, corn, soybeans, forage), and forestry covers trees grown in stands. It is one of the larger topics in past Botany tests, and most of it is practical: name the branch, pick the propagation method, do the fertilizer arithmetic, explain why a gardening practice works. The physiology behind almost every answer is in the earlier sections of this guide (apical dominance, adventitious roots, photoperiod, vernalization, nutrient mobility).

Branches of horticulture

BranchWhat it grows or studiesExamples of work
PomologyFruits and nuts (tree fruits, small fruits, tree nuts)Orchards, fruit thinning, rootstocks, storage
OlericultureVegetablesMarket gardens, greenhouse tomatoes, seed starting
FloricultureFlowering and foliage plants: cut flowers, potted plants, bedding plantsGreenhouse production of poinsettias, roses, mums
Landscape (ornamental) horticulturePlants for landscapes, indoors and outNursery production, landscape design and installation, maintenance
Turf managementLawns, golf courses, sports fieldsMowing height, grass species choice, irrigation
ArboricultureCare of individual trees, shrubs and woody vinesPruning, tree risk assessment, planting (the work of an arborist)
ViticultureGrapesTrellis training, vineyard rootstocks
Postharvest physiologyKeeping produce alive and fresh after harvestCold and controlled-atmosphere storage, ethylene control

Two neighboring words are not horticulture: silviculture is growing forest trees as stands for timber and other wood products (forestry), and apiculture is beekeeping. Phenology is the study of seasonal timing in living things (first bloom, leaf-out, bird migration), which horticulturists use to time planting and pest control. Ornamental horticulture includes indoor plants as well as outdoor landscapes. Landscape design combines softscape (plants, turf) with hardscape (paths, walls, patios) and garden structures: a trellis is a flat frame or lattice that supports climbing plants; an arbor is a freestanding arched or roofed frame, often over a path or gate; a pergola is a larger structure of posts carrying an open roof of beams that vines can cover; a gazebo is a roofed, open-sided pavilion. The rose is the most popular cut flower in the United States, and the poinsettia (forced into color with long nights, see Light, day length and timing) is the best-selling potted flowering plant.

Propagation

Sexual propagation is growing from seed. Seed is cheap and carries genetic variation, but many cultivars (named, selected varieties) do not "come true" from seed: an apple seed grows into a new, unpredictable apple tree. Open-pollinated cultivars, including heirlooms, breed true when pollinated within the cultivar; F₁ hybrids come from crossing two inbred parents every year, so saved seed from them segregates and does not match the parent.

Asexual (vegetative) propagation produces clones, genetically identical to the parent, because only mitosis is involved. It works because many plant cells stay totipotent and meristematic tissue can form new organs. The main methods:

MethodHow it worksTypical plants
Stem cuttingsA stem piece forms adventitious roots at its base; dipping it in a synthetic auxin (IBA or NAA rooting hormone) speeds rooting. Softwood (spring growth), semi-hardwood (summer) and hardwood (dormant) cuttings differ in timingColeus, roses, willows, blueberries, grapes, figs
Cuttings of woody herbsSemi-hardwood or softwood stem cuttings root readily and reproduce the exact cultivar, which seed (slow, variable) does notLavender, rosemary, sage, thyme
Shoot (sucker) cuttings of herbaceous plantsSide shoots root in water or moist mix within days; the cut base of lettuce, celery or green onions resprouts leaves in a dish of waterTomato suckers, basil, coleus, impatiens
Leaf and leaf-bud cuttingsA leaf (sometimes with its petiole) regenerates roots and shootsAfrican violet, snake plant (Sansevieria), begonias, jade plant and other succulents
Root cuttingsRoot pieces form adventitious shootsHorseradish, blackberry, phlox
LayeringA stem is made to root while still attached to the parent, then cut free. Simple layering bends a branch into the soil; tip layering buries the shoot tip (black raspberries); air layering wounds a stem and wraps it in moist moss (rubber plant, Ficus); mound (stool) layering heaps soil over cut-back shoots (apple rootstocks)Forsythia, raspberries, rubber plant
Corms and cormelsEach year a new corm forms on top of the old one, with tiny cormels around its base; cormels are dug, stored and replanted to grow into flowering corms in a few yearsGladiolus, crocus
Division and separationSplitting a clump into rooted pieces (division), or removing naturally formed offsets, bulblets, cormels or "pups" (separation)Hostas, daylilies, irises, aloe pups, tulip and garlic bulbs, banana suckers from the rhizome
Specialized stemsPlanting tubers, rhizomes, stolons, bulbs or corms (see Roots, stems and leaves)Potato pieces with an "eye", strawberry runners, ginger, bananas
Grafting and buddingJoining a shoot piece (scion) or a single bud to a rooted plant (rootstock)Apples, pears, citrus, roses, grapes
Micropropagation (tissue culture)Small pieces of tissue (explants) grow on a sterile nutrient agar with hormonesOrchids, bananas, ferns, potatoes, berries

Micropropagation must be done under aseptic (sterile) conditions, because the sugary medium grows bacteria and fungi far faster than plant cells. It runs in stages: establish a clean explant, multiply shoots (high cytokinin-to-auxin ratio), root them (more auxin), then acclimatize the plantlets to open air ("hardening"). One explant can yield thousands of identical plants. Culture types include shoot-tip and meristem culture (meristems are often virus-free, so this "cleans up" infected stock), callus culture (an undifferentiated cell mass), embryo culture, anther culture (haploid plants) and cell-suspension culture. For citrus, viruses are eliminated by shoot-tip micrografting: a tiny shoot tip (well under a millimeter) from an infected tree is grafted onto a seedling rootstock grown in a test tube, giving virus-free budwood.

Grafting joins the scion (the upper part, which carries the desired cultivar and becomes the whole shoot system) to the rootstock (the root system and lower stem). The one essential requirement is cambium-to-cambium contact: the vascular cambium of both pieces must line up so that new xylem and phloem can knit across the union. Grafts take only between closely related plants, usually within a genus or family (a tomato scion on a potato rootstock works because both are Solanum, giving tomatoes above ground and potatoes below). Occasionally grafts work between genera: pears are dwarfed by grafting onto quince rootstock. The desired fruit genes are in the scion; the rootstock is chosen for root traits. Apples, pears, peaches, citrus and roses are propagated commercially by grafting or budding cultivars onto rootstocks, not from seed.

Graft or bud typeWhen and why
Whip (splice) graftScion and rootstock of the same small diameter, cut on matching slants
Whip-and-tongue graftA whip graft with interlocking "tongues" cut into both faces: more cambial contact and a stronger, self-holding union
Cleft graftScions wedged into a split in a much thicker stock; done in late winter or early spring, just before growth begins (topworking old trees to a new cultivar)
Bark graftScions slipped under the bark of a large stock in spring, when the bark "slips" (peels easily because the cambium is active)
T-budding (shield budding)A single bud with a shield of bark inserted into a T-shaped cut; done mid to late summer while the bark slips and the season's buds are mature (roses, fruit trees)
Chip buddingA chip of wood with a bud fits a matching notch; works even when bark is not slipping
Approach graftBoth plants stay on their own roots until the union heals
Bridge graftScions bridge a girdled trunk to restore phloem flow

Why graft? To clone cultivars that do not come true from seed or root poorly from cuttings; to use dwarfing rootstocks that control tree height and bring trees into bearing sooner (apples on Malling series stocks such as M.9); to get rootstock disease and pest resistance (European wine grapes, Vitis vinifera, are grafted onto American Vitis rootstocks such as V. riparia that tolerate the root louse phylloxera; cucumbers and melons are grafted onto nematode- and wilt-resistant cucurbit stocks); to suit a rootstock to drought or soil; to put several cultivars or species on one tree (multi-grafted "fruit salad" trees); to insert an interstem between rootstock and scion (double working, also called intergrafting); and to repair damage. A grafted grapevine usually needs about three years to bear a crop worth harvesting. Good grafting stock is disease- and virus-free and true to name; the rootstock is chosen for the local climate, soil and pests. Scion wood is usually one-year-old, pencil-thick shoots with plump buds, cut while dormant in winter and kept cool and moist until grafting. Many classic wine-grape vineyards decline in vigor and yield after a few decades (around 20 to 25 years is often quoted) and are replanted.

Pruning and training

Pruning works through apical dominance: the shoot tip makes auxin that keeps the buds below it dormant.

  • Pinching removes the terminal bud or tip of a young shoot with the fingers. Side buds are released, so the plant becomes bushier and more compact with more flowering stems (mums, basil, coleus, petunias).
  • A heading cut shortens a shoot to a bud and makes the plant denser below the cut. A thinning cut removes a whole branch back to its point of origin and opens the canopy without stimulating a flush of shoots.
  • Deadheading removes spent flowers. The plant stops putting resources into seed, which encourages more blooms and keeps it tidy.
  • Cut just outside the branch collar (the swollen ring where a branch joins the trunk), never flush. Trees do not heal wounds; they compartmentalize them (Alex Shigo's CODIT model), and the collar holds the tissue that seals the cut off. Wound dressings and paints are not recommended: they do not stop decay and can trap moisture.
  • Topping (cutting large branches back to stubs) is never acceptable arboriculture: it starves the tree, invites decay and produces weakly attached sprouts.
  • A common pruning dose guideline is to remove no more than about 25% of the live foliage of a mature tree in one season, and less from old or stressed trees. Large wounds and heavy live-tissue removal lead to decay, defects and stress.
  • Codominant leaders (two stems of similar size from one point) form a weak V-shaped union with included bark that can split in storms. Structural pruning picks one dominant leader and subordinates or removes the competitor while the tree is young.
  • A leader is the main vertical stem; a sucker is a vigorous shoot from the roots or from below a graft union; a water sprout is a vigorous upright shoot from a trunk or branch. Remove both suckers and water sprouts.
  • Arboricultural pruning types: crown cleaning (removing dead, diseased and broken branches), crown thinning (selectively removing live branches to let light and wind through), crown raising (removing lower limbs for clearance) and crown reduction (shortening the crown back to lateral branches, the acceptable alternative to topping).
  • Tools: hand pruners (bypass pruners, whose blades pass like scissors and make clean cuts on live wood, and anvil pruners, which crush and suit dead wood) for stems up to about 3/4 inch; loppers (long-handled) for thicker branches; pruning saws and pole pruners for large or high limbs; hedge shears for formal hedges. Larger limbs are removed with a three-cut method (an undercut, a top cut farther out to drop the weight, then the final cut at the collar) so the bark does not tear.
  • Disinfect pruners between plants (70% alcohol or a dilute bleach solution) so you do not carry diseases such as fire blight from plant to plant.

Timing follows where flowers form. Most fruit trees are pruned while dormant in late winter. Spring-flowering shrubs (forsythia, lilac) bloom on last year's wood, so prune them right after they flower; summer bloomers that flower on new wood are pruned in late winter. Fruit habit matters too: peaches fruit only on one-year-old shoots and are pruned hard every year; apricots fruit on one-year-old shoots and short-lived spurs; apples and pears fruit mainly on long-lived spurs on older wood, so heavy pruning removes crop. Raspberry and blackberry canes are biennial: first-year canes are primocanes and second-year canes are floricanes. Summer-bearing (floricane-fruiting) types fruit on the second-year canes, which then die, so cut them out right after harvest; fall-bearing (primocane-fruiting, everbearing) types also fruit at the tips of first-year canes and can be mowed to the ground each winter. Plums and cherries are best pruned in spring or summer rather than winter, because winter wounds let in silver leaf and bacterial canker; and whenever a plum is pruned, the concern is not to remove too much of the young (one- and two-year-old) wood and spurs that carry the next crops.

Training systems. Apples and pears are usually trained to a central leader (one main trunk, a Christmas-tree outline). Peaches and plums are trained to an open center (vase), which lets sunlight and air into the middle of the tree for better fruit color and less disease. Espalier trains a tree or shrub flat against a wall or trellis; topiary clips shrubs into ornamental shapes; bonsai is the Japanese art of keeping trees miniature in containers by root and shoot pruning; coppicing cuts trees to the ground to regrow many stems, and pollarding does the same at head height. Grapevines are trellised to support the vine and manage the canopy: vertical shoot positioning (VSP) trains shoots upward between wires and suits low- to moderate-vigor vineyards; Scott Henry and Smart-Dyson systems split vigorous canopies into upward and downward curtains (Smart-Dyson alternates upward and downward shoots from the same cordon); bush (goblet) vines are free-standing and traditional in warm, dry regions; the California sprawl lets shoots flop over a single wire, which shades the fruit zone and can cause uneven ripening.

Fruit thinning removes some young fruits soon after bloom. The remaining fruits grow larger and better colored, limbs are less likely to break, and the tree is less likely to fall into biennial bearing (a heavy crop one year, almost none the next).

Soil, media and amendments

Soil texture is the proportion of sand, silt and clay; loam has a balanced mix and is the gardener's ideal. Clay holds water and nutrients but drains and aerates poorly; sand drains fast and holds little. Adding organic matter (compost, manure, leaf mold) improves almost every soil: it binds sand, opens clay, feeds soil organisms and holds nutrients. An ideal garden soil is, by volume, roughly 45% mineral particles, 5% organic matter and 50% pore space, with the pores about half filled with water and half with air. Compaction (from foot traffic, machinery or working wet soil) does the opposite, so "increasing compaction" never improves a garden. Tilling or plowing loosens soil, buries residue and weeds and makes a seedbed, but repeated tillage breaks down structure and organic matter, so no-till and conservation tillage protect soil. Field capacity is the water a soil holds after excess has drained away; the permanent wilting point is the soil moisture below which plants can no longer extract water.

Amendment or mediumWhat it isWhy it is used
Peat mossPartly decomposed Sphagnum mossHolds many times its weight in water, light, acidic; a base of soilless mixes (low in nutrients)
CoirCoconut-husk fiberRenewable peat substitute with similar water holding
PerliteVolcanic glass heated until it pops into white, light granulesAeration and drainage; holds little water
VermiculiteA mica-like clay mineral heated until it expands into layered flakesHolds water and nutrients (high CEC); good for seed starting
LECALightweight expanded clay aggregate (fired clay pebbles)Reusable, airy, wicks water; used in semi-hydroponics
RockwoolSpun molten rock fibersInert, sterile hydroponic growing cubes and slabs
Lime (calcium carbonate; dolomitic lime adds Mg)Ground limestoneRaises soil pH (less acidic) and supplies calcium
Elemental sulfur, aluminum sulfate, ammonium sulfate, peatAcidifying materialsLower soil pH for acid-loving plants
CompostDecomposed organic matterA soil conditioner more than a fertilizer: improves structure, aeration and drainage in clay, water and nutrient holding in sand, buffers pH, feeds soil organisms and relieves compaction; its own nutrient content is low

Most vegetables grow best at about pH 6.0 to 7.0 (some guides say 5.5 to 7.0). Acid-loving plants include blueberries (about pH 4.5 to 5.5), azaleas, rhododendrons and camellias; cabbage-family crops such as cauliflower do poorly in strongly acidic soil, where clubroot also thrives. In alkaline soil, iron and manganese become unavailable and acid-lovers turn yellow between the veins (iron chlorosis). Very acidic soil (below about pH 5) releases toxic aluminum ions (Al³⁺) that stunt root elongation, which is why breeders select aluminum-tolerant rice, maize and wheat.

Mulch is any material spread on the soil surface: organic (shredded bark, wood chips, straw, leaves) or inorganic (gravel, plastic sheeting). Landscape fabric (woven or spun weed-barrier cloth laid under rock or bark) is an inorganic mulch that blocks weeds but lets water and air through. It suppresses weeds, conserves soil moisture, moderates soil temperature and, if organic, adds organic matter as it breaks down. Keep it a few inches deep and pulled back from trunks: deep "volcano" mulch against the bark invites rot and pests. Grasscycling is leaving lawn clippings on the lawn to return nitrogen.

Cover crops (rye, clover, buckwheat) protect bare soil from erosion between crops; a green manure is a cover crop grown specifically to be tilled into the soil to add organic matter (and, for legumes such as clover or vetch, nitrogen). Crop rotation moves plant families to new beds each year: it breaks pest and disease cycles and balances nutrient use, because growing the same crop in the same spot repeatedly draws down the same nutrients and builds up its pests. The classic sequence plants a heavy nitrogen feeder such as corn after a legume that left fixed nitrogen behind. Monoculture (one crop over a large area) is efficient but highly vulnerable to pests and disease. Companion planting pairs plants that help each other: the "Three Sisters" of corn (a stalk for beans to climb), beans (nitrogen fixation) and squash (big leaves shade out weeds and hold soil moisture); marigolds, which suppress root-knot nematodes and are said to deter some insects; nasturtiums as a trap crop that draws aphids and squash pests away; and herbs such as mint that repel some pests (mint itself spreads so aggressively by rhizomes that gardeners grow it in containers).

Fertilizers

A fertilizer grade (analysis) lists three numbers, always in the order N-P-K: the percent by weight of total nitrogen (N), available phosphate (expressed as P₂O₅) and soluble potash (expressed as K₂O). A complete fertilizer contains all three. Nitrogen drives leafy growth and green color; phosphorus supports roots, flowering and energy transfer (ATP); potassium supports stomatal control, disease resistance and strong stems.

A balanced or all-purpose fertilizer has equal numbers (10-10-10, 20-20-20); a starter or "bloom" fertilizer is high in phosphorus (10-20-10); single-nutrient fertilizers include urea (46-0-0), ammonium nitrate (34-0-0), ammonium sulfate (21-0-0), triple superphosphate (0-46-0) and muriate of potash (0-0-60). Plants take up phosphorus as orthophosphate ions (H₂PO₄⁻ and HPO₄²⁻); polyphosphate fertilizers must first break down to orthophosphate in the soil. Inorganic (synthetic) fertilizers are concentrated, fast-acting and have an exact analysis, but they add no organic matter, leach easily and can "burn" plants. Organic fertilizers (manure, compost, bone meal, blood meal, fish emulsion) release nutrients slowly because soil microbes must break them down first, so they are mixed into moist soil ahead of planting; they improve soil structure but have low and variable nutrient content. Poultry manure is richer in nitrogen than cow manure. Slow-release (coated) fertilizers meter nutrients out over weeks to months.

Ways to apply: broadcasting (spreading evenly over the whole surface), banding (in a strip beside the seed row at planting), side-dressing (along a row or in a ring around a plant during the season), top-dressing (on the surface of turf or an established bed), foliar feeding (spraying dilute nutrients on leaves) and fertigation (through irrigation water). Over-fertilizing causes salt buildup that pulls water out of roots (fertilizer burn, soil salinization), pollutes water through runoff and, with too much nitrogen, gives lush leaves and few flowers or fruits, which is why flowering plants are not switched to a high-nitrogen fertilizer once they bloom.

Climate, site and timing

The USDA Plant Hardiness Zone Map divides North America by the average annual extreme minimum winter temperature (the coldest night of an average year). Each zone spans 10 °F and is split into "a" and "b" halves of 5 °F; zone 7, for example, has average minimums of 0 to 10 °F, and zone 5 has −20 to −10 °F. The contiguous United States runs from about zone 3 (northern Minnesota, North Dakota) to zone 10 or 11 (southern Florida). The 2023 update shifted about half the country into the next warmer half-zone, consistent with warming winters. Hardiness zones say nothing about summer heat; the American Horticultural Society's Heat Zone Map counts days above 86 °F for that.

A microclimate is a local climate that differs from the area around it: a bed against a sunny, south-facing wall is warmer, and a low-lying open spot is a frost pocket because cold, dense air drains downhill and pools there on clear, still nights. Many temperate fruit trees and bulbs need a minimum number of chilling hours (hours at cool temperatures, roughly 32 to 45 °F) to break dormancy and bloom evenly; this is why spring-flowering bulbs such as tulips, daffodils and crocuses are planted in fall.

Fruit crops have climate limits. Citrus is subtropical and frost-tender, grown outdoors in the U.S. only in about zones 9 to 11 (Florida, Texas, California, Arizona) and elsewhere in containers moved indoors; mangoes, bananas and papayas need frost-free tropical conditions. Figs grow outdoors in about zones 7 to 10 (hardier cultivars into zone 6 with protection). Apples (roughly zones 3 to 8), pears and sweet cherries need winter chilling, so they do poorly in the warmest zones; peaches grow in about zones 5 to 9. Strawberries are grown almost everywhere except the hottest zones, where they are treated as winter annuals. European pears (Bartlett, d'Anjou, Bosc) are pear-shaped with soft, buttery flesh and are picked mature but hard, then ripened off the tree; Asian pears (nashi) are round, crisp and juicy like an apple and ripen on the tree.

Hedges use dense shrubs that tolerate repeated shearing: privet, boxwood, yew, holly, arborvitae, hornbeam and beech, plus barberry or roses where a spiny barrier is wanted. Shear hedges slightly narrower at the top than at the base so the lower branches get light and stay leafy.

Cherries: tart (sour) cherries are self-fruitful, but most sweet cherries are self-unfruitful and need a second, compatible cultivar nearby for pollination (a few, such as 'Stella' and 'Lapins', are self-fertile). Both bloom early, so spring frosts can kill the flowers; birds take much of the crop unless trees are netted; and rain on ripening sweet cherries makes them crack.

Intensive beds. Square-foot gardening divides a bed into 1-foot squares and plants each square at a fixed density instead of in rows: typically 1 large plant (tomato, pepper), 4 medium plants (lettuce, marigold), 9 (beets, spinach, bush beans) or 16 small plants (carrots, radishes, onions) per square. So 16 carrots per square foot means one carrot every 3 inches each way, and a 4 × 4 ft bed of carrots holds 16 × 16 = 256 plants. Proper spacing gives each plant light, water and nutrients and lets air move, reducing disease; crowding gives small, spindly plants.

Gardeners in deer country choose plants deer avoid: aromatic or strongly scented foliage (lavender, sage, rosemary, mint, Russian sage), fuzzy or hairy leaves (lamb's ear), toxic plants (daffodils, foxglove), and tough, spiny or leathery foliage (barberry, boxwood, many ferns and ornamental grasses). Deer favorites include hostas, tulips, daylilies and arborvitae.

Cool-season vegetables grow best in spring and fall and tolerate light frost: lettuce, spinach, peas, radishes, broccoli, cabbage, cauliflower, kale, carrots, beets and onions. Many bolt (flower and turn bitter) in summer heat. Warm-season vegetables are frost-tender and need warm soil: tomatoes, peppers, eggplant, cucumbers, squash, melons, beans, sweet corn and okra. They are planted after the last frost date (cucumbers about two to three weeks after it, once the soil has warmed). Spinach is a classic cool-season, frost-hardy, long-day crop: it is sown in early spring or fall and bolts quickly as days lengthen and heat rises. Cauliflower is a cool-season crop too, but in India and other tropical regions early, heat-tolerant cultivars are grown through the warm, rainy monsoon season.

Seed-starting rules of thumb: plant a seed about two to three times as deep as its diameter, so tiny carrot seeds go only about 1/4 inch deep and lettuce seed is barely covered (about 1/8 inch or pressed onto the surface, since many lettuce cultivars need light to germinate); marigolds go about 1/8 to 1/4 inch, and beans about 1 inch. Most vegetable seeds germinate fastest in warm soil (beans near 80 °F; most warm-season seeds in the 70s to mid-80s °F), and seedlings indoors need strong light for many hours a day or they stretch (etiolate). Start tomatoes and marigolds indoors about 6 to 8 weeks before the last frost. The first leaves most seedlings show are their cotyledons (seed leaves), which look different from the plant's later leaves; seedlings are transplanted or thinned once they have one or two sets of true leaves. Hardening off is gradually exposing indoor-grown seedlings to outdoor sun, wind and cool nights over about one to two weeks before transplanting, so they do not suffer transplant shock. A seed drill places seeds at an even depth and spacing in rows, the opposite of broadcasting seed by scattering it. When transplanting a container plant whose roots circle the pot (root-bound), tease the roots apart or score or slice the root ball vertically in a few places so new roots grow outward into the soil instead of continuing to circle.

Water, protected growing and soilless culture

Drip irrigation delivers water slowly to the root zone through emitters and conserves the most water; overhead sprinklers lose water to evaporation and wind and wet the leaves, which spreads foliar disease; flood and furrow irrigation are the least efficient. Water in the morning so roots take up water before the heat of the day and leaves dry quickly. Deep, infrequent watering grows deeper roots than frequent sprinkles. Too much water is as harmful as too little: waterlogged soil has no oxygen, so roots die and root rot sets in, which is why pots need drainage holes. Uneven watering (dry spells then a soaking) makes tomatoes crack and contributes to blossom-end rot (a calcium-supply problem; see Nutrient deficiencies).

Xeriscaping is landscaping designed to reduce or eliminate irrigation: planning and zoning plants by water need, improving soil, limiting thirsty turf, choosing drought-tolerant and native plants (lavender, succulents, ornamental grasses), efficient irrigation such as drip, and mulching. The three basics of lawn care are mowing (never removing more than about one-third of the blade at a time), watering (deep and infrequent) and fertilizing. Mowing in the same direction every time pushes grass blades to lean and compacts wheel tracks, so alternate the pattern. Delaying spring mowing ("No Mow May") or mowing higher and less often lets dandelions, clover and violets flower for early-season bees.

A greenhouse regulates temperature (and light and humidity) so crops can be grown out of season; cold frames, hotbeds, high tunnels (hoop houses) and floating row covers are cheaper season extenders. Most houseplants and many greenhouse crops grow well at roughly 65 to 75 °F by day with nights about 10 °F cooler; tropical foliage plants are damaged by temperatures much below 50 °F. Hydroponics grows plants without soil, with roots in a mineral nutrient solution (sometimes supported by an inert medium such as rockwool, perlite or clay pebbles). Common systems:

SystemHow roots get water and nutrients
Deep water culture (raft)Roots hang in aerated nutrient solution under a floating raft
Nutrient film technique (NFT)A thin film of solution flows down sloped channels past the roots
Ebb and flow (flood and drain)A tray floods with solution, then drains, letting air back to the roots
Drip (media-based)Solution drips onto each plant's medium (common for greenhouse tomatoes and cucumbers)
WickPassive; a wick draws solution up into the medium
AeroponicsRoots hang in air and are misted with solution

Hydroponics uses far less water than field growing, gives fast growth and high yields in a small space, avoids soil pests and weeds and runs year-round. Its drawbacks are high startup cost, dependence on pumps and power, the need to monitor solution pH (about 5.5 to 6.5) and nutrient strength (electrical conductivity), and the risk that a root disease (such as Pythium) spreads quickly through shared water. Leafy greens, lettuce and herbs are the classic hydroponic crops, followed by tomatoes, cucumbers, peppers and strawberries. Hydroculture is the broader term for growing plants in water or an inert medium instead of soil; hydroponics is one form of it.

Harvest, storage and plant protection

  • Onions are left until their tops fall over and dry, then cured (dried in a warm, airy place for a few weeks) and stored cool and dry.
  • Bulb foliage must be left to die back naturally: the leaves keep photosynthesizing and refill the bulb for next year. Tender bulbs and tubers that are dug for winter (dahlias, gladiolus) are stored cool, around 40 to 50 °F, and dry.
  • Cut flowers last longest when harvested in the cool of morning or evening, cut with clean, sharp tools, re-cut at an angle under water, placed promptly in clean water (often acidified and with sugar and a biocide in commercial floral preservatives) and kept cool and away from ripening fruit, whose ethylene speeds wilting.
  • Apples keep for months in controlled-atmosphere storage: low temperature, low oxygen and raised CO₂ slow respiration and ripening; 1-MCP blocks ethylene receptors.
  • Blanching in the garden means excluding light from part of a growing plant (tying leaves over a cauliflower head, hilling soil around leeks or celery) so it stays pale, tender and mild. The cost is extra labor, a higher risk of rot under the cover and fewer light-dependent nutrients.
  • Integrated pest management (IPM) combines monitoring and action thresholds with cultural controls (resistant cultivars, rotation, sanitation, spacing for airflow), mechanical controls (hand-picking, row covers, traps), biological controls and, only as needed, targeted pesticides. Biological controls include lady beetles and lacewing larvae against aphids, parasitic wasps (Trichogramma attacks moth eggs; Encarsia attacks whiteflies), predatory mites against spider mites, beneficial nematodes against soil grubs, Bacillus thuringiensis (Bt) sprays against caterpillars, and insect viruses such as nuclear polyhedrosis virus. Biological control is targeted, avoids chemical residues and is slow for pests to evolve resistance to, and an established natural enemy can keep working for years; but it acts slowly, works best on low or moderate pest levels, needs careful timing and conditions, can fail if the agent does not establish, and an introduced agent can attack non-target species (as the cane toad and some introduced weevils did). The soil fumigant methyl bromide was phased out under the Montreal Protocol because it depletes stratospheric ozone. IPM's environmental benefits: less pesticide in soil and water, less bioaccumulation and biomagnification up food chains, less harm to pollinators and natural enemies, slower evolution of pesticide resistance, and fewer spray passes (less fuel, CO₂ and soil compaction). Mixed cropping (intercropping) and mulching also reduce pests by hiding hosts, harboring predators and blocking soil-borne spores from splashing onto leaves.

Common garden pests: aphids (small, soft, sap-sucking insects; they excrete sticky honeydew that grows sooty mold, are tended by ants and transmit plant viruses), whiteflies, spider mites (stippled leaves and fine webbing), thrips, scale insects and mealybugs, flea beetles (tiny jumping beetles that chew shot holes in seedlings of tomatoes, peppers, eggplant, potatoes and cabbage-family crops), cucumber beetles (which also spread bacterial wilt), squash vine borers (moth larvae that tunnel into the stems of squash, pumpkins and other gourds), the Colorado potato beetle, tomato hornworms, Japanese beetles, slugs and snails, and vertebrates such as deer, rabbits and voles (which eat roots, bulbs and bark below ground or under snow).

Plant breeding

Breeders improve crops by selection (keeping the best plants each generation), hybridization (crossing parents to combine traits, then selecting), mutation breeding, marker-assisted selection and genetic engineering (see Genetically modified organisms). Recurrent selection repeatedly selects superior individuals and intercrosses them; progress per cycle (response to selection) rises with more additive genetic variance and stronger selection. A cultivar name is written in single quotes after the species name, as in Malus domestica 'Honeycrisp'. Heritability measures how much of the variation in a trait is genetic: broad-sense heritability H² = V_G / V_P (all genetic variance over total phenotypic variance) and narrow-sense heritability h² = V_A / V_P (only the additive variance, which is what parents reliably pass to offspring). Breeders use the breeder's equation, R = h² × S, where S is the selection differential (how far the selected parents' mean is above the population mean) and R the response in the next generation; a trait with h² = 0.5 and S = 10 cm should gain about 5 cm. Dominance and epistasis variance are not passed on predictably through sexual crosses, but they can be captured in clones and F₁ hybrids. Breeding goals include yield, pest and disease resistance, drought tolerance, quality, shelf life and plant form (dwarfing).

Practices and materials at a glance

Many horticulture questions come down to one practice or material: what it is, why and when a gardener uses it, and what goes wrong. The table below gathers those facts in one place, grouped by category so you can scan a whole topic (soil pH, compost, pruning, storage, pest control, lawns) at once. Values are typical U.S. extension figures; real products and regions vary, so treat numbers as "about". Use the Category column to filter, and read the Cautions column for the common "true or false" traps.

ReferenceGardening and horticulture practices· 134 rows

Fertilizer grades are N-P₂O₅-K₂O percentages. "Raises pH" = makes soil less acidic. Temperatures in °F unless marked. IPM = integrated pest management.

134 rows
Practice or materialCategoryWhat it isWhy and whenCautions
Lime: ground limestone (calcitic), dolomitic, hydrated or quicklimeAmendment; raises pHCalcium carbonate; calcium magnesium carbonate; calcium hydroxide or oxideCorrects acid soil and adds Ca (dolomitic also Mg); rate from a soil test's lime requirement; fall application reacts by spring; hydrated lime acts fastestLimestone is slow (months; finer grind faster); hydrated lime is caustic and easy to overshoot; over-liming locks up Fe, Mn, Zn, P; dolomitic adds unneeded Mg on high-Mg soils
Wood ashAmendment; raises pHAsh of burned untreated wood; mostly Ca and K carbonates, some PWeaker liming agent than limestone; supplies KNot on alkaline soil, blueberries or potato ground (higher pH favors scab); no ash from coal, charcoal briquettes or treated wood
EggshellsAmendment; raises pHCalcium carbonateSlow Ca source; often added at tomato planting against blossom-end rotBreak down slowly; blossom-end rot is mostly uneven watering, not low soil Ca
Elemental sulfurAmendment; lowers pHYellow S; soil bacteria oxidize it to sulfuric acidAcidifies for blueberries (pH 4.5 to 5.5), azaleas, rhododendrons; apply months aheadSlow, needs warm moist soil; clay and high-lime soils need much more; overdose hard to reverse
Aluminum sulfate; iron sulfateAmendment; lowers pHSalts that acidify quicklyFast acidification; Al turns bigleaf hydrangea blue; iron sulfate also supplies Fe and greens chlorotic plantsRepeated Al builds toxic Al³⁺; iron sulfate stains concrete rust-orange
Ammonium sulfate (21-0-0)Fertilizer; lowers pHSynthetic N with SN for acid-loving plants; most acidifying common N sourceCan burn; long use acidifies most soils (calcareous soils resist)
GypsumAmendment; little pH changeCalcium sulfateAdds Ca and S without liming; reclaims sodic (sodium) soils by displacing NaDoes not loosen ordinary non-sodic clay; does not raise pH
Sphagnum peat moss; coirMediumPartly decayed Sphagnum (pH about 3.5 to 4.5); coconut husk fiber (near neutral)Water holding and light weight; base of soilless mixes; coir is the renewable substitutePeat is nonrenewable (bogs store carbon) and repels water when dry; coir can be salty, so buy it rinsed
Perlite; pumiceMediumHeated, popped volcanic glass; porous volcanic rock; both neutral and inertAeration and drainage in potting, rooting and cactus mixes; pumice is heavier and is less likely than perlite to float to the topHold little water or nutrients; perlite dust (wet it first)
VermiculiteMediumHeated, expanded mica-like mineralHolds water and nutrients (high CEC); seed starting; covers fine seedsCompresses over time; old Libby, Montana ore was asbestos-contaminated
SandAmendmentCoarse mineral particlesDrainage in raised-bed or cactus mixesA little sand in clay can set like concrete; needs about half the volume to help
BiocharAmendmentCharcoal made by pyrolysis (heating biomass with little oxygen)Long-lasting carbon; raises CEC and water holding; carbon storageUsually alkaline; fresh char can tie up nutrients, so charge it in compost first
Compost; leaf moldAmendmentDecomposed organic matter (dark, crumbly, earthy smell); leaves decayed mainly by fungi over 1 to 2 yearsSoil conditioner for any soil, 1 to 3 in worked in yearly; leaf mold is an excellent mulchLow, variable nutrients; immature compost ties up N and can harm seedlings
Sawdust, fresh wood chips (mixed into soil)AmendmentVery high C:N wood (several hundred to 1)Adds organic matter slowlyMicrobes borrow soil N while decaying it (N tie-up, yellow plants); add N; less of a problem as a surface mulch
Coffee grounds (used)Amendment; compost greenAbout 2% N; near-neutral pH once brewedA "green" for compost; thin mulch layerNot strongly acidic; thick layers crust and shed water
Pine needles (pine straw)MulchFallen conifer needlesLoose, long-lasting mulch that stays in place on slopes; popular for azaleasBarely change soil pH; flammable when dry
Epsom saltFertilizer; MgMagnesium sulfateCorrects a confirmed Mg deficiency (yellowing between veins of old leaves); foliar sprayNo benefit if Mg is adequate; excess competes with Ca and K
Chelated ironFertilizer; micronutrientFe held soluble by an organic chelate (EDTA, DTPA, EDDHA)Treats iron chlorosis of young leaves in alkaline soil; EDDHA works at the highest pHTreats the symptom; the cause is usually high pH, so test pH first
Blood mealFertilizer; organicDried blood, about 12-0-0Fast organic N for leafy growthCan burn like synthetic N; attracts dogs and animals
Bone mealFertilizer; organicSteamed ground bones, about 3-15-0 plus CaTraditional P source at planting for bulbs and rootsP barely available above about pH 7; attracts digging animals
Fish emulsion; fish mealFertilizer; organicLiquid fish by-product, about 5-1-1Quick liquid N for transplants and containersStrong odor
Other organic fertilizersFertilizer; organicCottonseed meal (about 6-2-1, mildly acidifying); kelp meal (mostly K and trace elements); rock phosphate (slow P); greensand (glauconite, slow K)Cottonseed meal for acid-loving shrubs; kelp for micronutrients and foliar sprays; rock phosphate and greensand as long-term reservesRock phosphate works only in acid soil; all act slowly; kelp contains salt
Organic vs. synthetic fertilizerFertilizerOrganic: from living things, low analysis; synthetic: manufactured salts, high analysisOrganic: slow, feeds soil life, improves structure; synthetic: fast, exact, cheap per pound of NOrganic N must be mineralized by microbes (slow in cold soil); plants absorb the same ions either way; synthetic salts can burn and leach
Complete, balanced and starter fertilizersFertilizer; syntheticComplete has N, P and K; balanced has equal numbers (10-10-10); starter is high-P and soluble (10-20-10)General feeding when no test is done; starter for root growth of transplantsUnneeded P builds up and pollutes water; salts near roots burn
Urea (46-0-0)Fertilizer; syntheticHighest-N solid fertilizer; converted to ammonium by ureaseCheap N for lawns and cropsLeft on the surface it loses N as ammonia gas; water it in
Ammonium nitrate (34-0-0)Fertilizer; syntheticHalf nitrate (instant), half ammoniumFast NOxidizer and explosive hazard; sale restricted
Calcium nitrate (15.5-0-0)Fertilizer; syntheticNitrate N plus soluble CaTomatoes, peppers and hydroponics against blossom-end rot; does not acidifyAbsorbs moisture from air (cakes)
Superphosphate (0-20-0), triple superphosphate (0-46-0); muriate of potash (0-0-60), sulfate of potash (0-0-50)Fertilizer; syntheticAcid-treated rock phosphate (also MAP 11-52-0, DAP 18-46-0); potassium chloride; potassium sulfateP for roots and flowering; K for fruit, stems and disease resistanceP moves little, so place it in the root zone; KCl has a high salt index and chloride harms sensitive crops (potatoes, tobacco, strawberries)
Slow-release vs. water-soluble fertilizerFertilizerPolymer-coated prills (Osmocote-type), sulfur-coated urea or urea-formaldehyde; dissolved fertilizer such as 20-20-20, also used for foliar feedingSlow-release feeds for months with less burn and leaching; soluble gives quick feeding of containers and transplantsSlow-release releases faster in heat and costs more; soluble is short-lived and burns leaves if strong or in hot sun
Late-season fertilizing of woody plantsFertilizer timingHigh-N feeding in late summerAvoid it: feed in early springPushes soft growth that winter kills; excess N favors leaves over flowers
C:N ratio in compostingCompostCarbon-to-nitrogen balance of the pileAim for about 25 to 30:1, often about 2 to 3 parts brown to 1 part green by volumeToo much C: slow, cold pile; too much N: ammonia smell
Browns and greensCompostBrowns: dry, carbon-rich (dead leaves about 60:1, straw about 80:1, sawdust, shredded paper, cardboard); greens: moist, N-rich (grass clippings about 20:1, fruit and vegetable scraps about 15:1, coffee grounds, fresh herbivore manure)Browns give energy and structure; greens supply N and heat the pileNo glossy paper or treated wood; thick mats of clippings go slimy and anaerobic, so layer or mix
Hot vs. cold compostingCompostHot: large (about 3 × 3 × 3 ft or more), moist, turned pile; cold: unturned heapHot reaches 130 to 160 °F, kills most weed seeds and pathogens, done in weeks to months (mesophilic → thermophilic → cooling and curing); cold is low effort, done in 6 to 24 monthsAbove about 160 °F kills beneficial microbes; keep moist like a wrung-out sponge and turn when it cools; cold piles do not kill seeds or pathogens
What not to compostCompostMeat, fish, bones, dairy, fats and oils; dog, cat or pig feces; diseased plants; weeds with seeds or runners; black walnut debris; treated wood; coal ashAvoids odors, rats, raccoons, flies and spreading pathogens or weedsDiseased material only in a pile that truly gets hot; walnut (juglone) breaks down after long composting
VermicompostingCompostBins of red wigglers (Eisenia fetida), not nightwormsTurns kitchen scraps into castings; works indoorsAvoid too much citrus, onion and meat; keep moist and below about 80 °F
Animal manuresManureFresh N roughly: cow about 0.5%, horse about 0.7%, sheep about 1%, chicken about 1 to 1.5% (more when dried), rabbit about 2%Organic matter plus N; poultry richest ("hot"), cow mildestFresh "hot" manure burns plants; horse and cow manure can carry weed seeds and persistent herbicides (aminopyralid, clopyralid) that cripple tomatoes and beans
Manure safetyManureRules for manure on food cropsCompost or age it first. U.S. organic rules: raw manure at least 120 days before harvest if the edible part touches soil, 90 days otherwise; composted manure must hold 131 to 170 °F for 3 days (in-vessel or static pile) or 15 days with 5 turnings (windrow)E. coli O157:H7, Salmonella; never dog, cat or pig manure on food crops (roundworms, Toxoplasma); still wash produce
Straw; grass clippingsMulchDry grain stems; dried lawn clippings in thin layersStraw for vegetable rows and paths, keeps strawberries and squash clean; clippings are a free N-rich mulchUse straw, not hay (full of seeds); straw cools soil, so wait for warm soil under warm crops; no clippings from herbicide-treated lawns
Shredded bark, wood chipsMulchTree bark or chipped wood, 2 to 4 in deepPerennial beds and trees; suppress weeds, hold water, add organic matterKeep a few inches off trunks (no "mulch volcanoes"); slight N tie-up only at the surface
Rubber mulch; gravel and stoneMulch; inorganicShredded recycled tires; rock layerRubber lasts on playgrounds; rock suits xeriscapes and succulentsNeither adds organic matter; rubber can leach zinc, heats up and burns; rock reflects heat
Black and reflective (silver) plastic mulchMulch; inorganicPolyethylene or metallized film over the bedBlack warms soil for melons, tomatoes and peppers, stops weeds, keeps fruit clean; silver repels aphids and thrips that spread virusesNeed drip tubing underneath; disposal waste; silver keeps soil cooler than black
Clear plastic; soil solarizationMulch; weed and disease controlClear plastic sealed over moist, bare soil in the hottest weeks of summer for 4 to 6 weeksHeats the top inches enough to kill many weed seeds, nematodes and soilborne pathogensClear plastic as a growing mulch lets weeds grow underneath
Landscape fabricMulch; inorganicWoven or spun weed-barrier cloth under rock or barkBlocks weeds while passing water and airWeeds root into organic mulch on top; roots grow into it; poor for beds you replant
Living mulchMulch; croppingLow cover crop (clover) grown between crop rowsCovers soil, adds N, feeds beneficial insectsCompetes for water and nutrients if not mowed
Germination conditionsSeedsNeeds water, oxygen and suitable temperature; some seeds need lightMost warm-season seeds germinate best near 75 to 85 °F; cool-season crops germinate in cooler soilLight-requiring seeds (lettuce, petunia, impatiens, begonia) go on the surface; soggy media starve seeds of oxygen
Scarification; stratificationSeedsNicking, sanding, hot water or acid on a hard seed coat; cold, moist storage (about 34 to 41 °F) for weeksScarify morning glory, sweet pea, lupine, okra, redbud; stratify many temperate trees, shrubs and wildflowers (milkweed, apples, many natives) to break embryo dormancyDo not damage the embryo; stratification must be moist cold, not dry; fall sowing outdoors does it naturally
Seed-starting medium; damping-offSeedsSterile, fine, soilless mix (peat or coir, vermiculite, perlite); damping-off is seedling rot at the soil line (Pythium, Rhizoctonia, Fusarium)Even moisture and air, no pathogens or weed seeds; prevent damping-off with clean pots, bottom watering, airflow and spacingGarden soil compacts and carries the fungi; overwatering, cool wet media and low light favor damping-off
Seed storage and viabilitySeedsKeep seeds cool, dark and dry (sealed jar in a refrigerator)Rule of thumb: storage °F + % relative humidity under 100; a rag-doll (paper towel) test checks germination %Onion and parsnip seed are short-lived (about 1 year); leek about 2 years
ThinningPlantingRemoving extra seedlings to the final spacingWhen seedlings have 1 to 2 true leaves; gives each plant light, water, airSnip with scissors rather than pull, so neighbors' roots are not disturbed
TransplantingPlantingMoving seedlings to the gardenCloudy day or evening; water in; most plants set at the same depthTomatoes can go deeper (stems root); taprooted and root crops (carrots, beets) and squash family resent transplanting, so direct-seed them
Hardening offPlantingGradually exposing indoor seedlings to sun, wind and cooler nightsOver about 7 to 14 days before transplanting; reduce water a littleSkipping it causes sunscald, wilting and transplant shock
Succession plantingCropping systemSowing small batches every 2 to 3 weeks, or following one crop with anotherSteady harvest of lettuce, radishes, beans, sweet corn; e.g. fall carrots after spring peasLate sowings must mature before frost
IntercroppingCropping systemTwo or more crops in the same space at onceUses space and time; fast radishes between slow carrots; Three Sisters (corn as pole, beans fix N, squash shades weeds)Crops compete if spacing or timing is wrong
Companion planting; trap cropsCropping systemPairing plants for claimed benefits; a more attractive plant that draws pests awayFrench marigolds grown densely suppress root-knot nematodes; flowers draw beneficial insects; nasturtium or blue hubbard squash as traps for squash bugs and cucumber beetlesMany pairings are folklore; trap crops must be destroyed or sprayed or they breed pests; some plants are allelopathic (black walnut)
Crop rotationCropping systemMoving plant families to new beds each year, typically a 3- to 4-year cycleBreaks pest and disease cycles; balances nutrients (legume → heavy feeder such as corn → light feeder such as root crops)Rotate by family: tomato, potato, pepper and eggplant count as one (Solanaceae), so soilborne wilts persist for years
Non-legume cover cropsCover cropCereal (winter) rye; oats; buckwheat; tillage radishRye: hardy, holds soil, scavenges N, big biomass; oats winter-kill in cold zones; buckwheat: fast summer smother crop that flowers in weeks, feeds pollinators, mobilizes P; radish taproots break compactionRye is allelopathic to small seeds and tough to kill when tall (not the same as ryegrass); mow buckwheat before seed set
Legume cover crops (hairy vetch, crimson clover, field peas)Cover cropNitrogen-fixing cover cropsAdd N for the next crop; tilled or cut as green manure in springNeed the right Rhizobium inoculant; vetch can reseed as a weed
Rhizobium inoculantPlantingPeat-based bacteria coated on legume seedEnsures nodules and N fixation where that legume has not grown recentlyStrains are crop-specific (pea and bean groups differ); live product, keep cool
Tillage vs. no-tillSoil carePlowing, rototilling or double digging; or planting into undisturbed soil and residueTillage prepares a seedbed, aerates, buries residue and weeds; no-till cuts erosion, builds organic matter and soil life, saves waterTillage destroys structure, speeds organic-matter loss and erosion, forms a plow pan (never work wet soil); no-till relies more on mulch, cover crops or herbicides and warms slowly
Raised bedsPlantingSoil built up 6 to 12 in or more, often framedBetter drainage, earlier warming, no walking on soil; keep 3 to 4 ft wide to reach the middleDry out faster; frames cost; avoid old pressure-treated or creosote wood
HillingPlantingMounding soil around stemsPotatoes: covers tubers so they do not turn green (solanine) and adds room for tubers; also leeksHilling too close damages roots
Drip irrigation; soaker hosesWaterSlow water to the root zone through emitters or porous hoseMost efficient (often about 90%); leaves stay dry, so less foliar disease; good under plastic mulchClogging; needs filters and pressure regulators
Sprinkler, furrow and flood irrigationWaterOverhead spray; water run down channels or across fieldsSprinklers for lawns, large areas and frost protection; furrow and flood where water is cheap (rice paddies)Sprinklers lose water to wind and evaporation and wet leaves (disease); furrow and flood are least efficient and build salts
How much to waterWaterAbout 1 in per week (rain plus irrigation) for most gardens and lawnsDeep, infrequent watering builds deep roots; water in the morning; check soil 2 in downContainers dry daily in summer; overwatering suffocates roots
ContainersPlantingPlants in potsNeed drainage holes and a light soilless mix; repot into a pot 1 to 2 in wider when rootboundA gravel layer at the bottom does not help drainage; it raises the perched water table
Heading vs. thinning cutsPruningHeading: back to a bud; thinning: whole branch to its originHeading thickens growth below the cut; thinning opens the canopy with little regrowthHeading at random spots (topping, shearing) makes dense weak sprouts
Pruning timingPruningMatching cuts to where flowers form and to disease riskSpring bloomers on old wood (forsythia, lilac, azalea): right after flowering; summer bloomers on new wood (butterfly bush, panicle hydrangea, crape myrtle): late winter; fruit trees: dormant late winter; oaks: dormant season (winter)Winter pruning of old-wood bloomers removes this spring's flowers; pruning oaks in spring and early summer lets sap beetles spread oak wilt
Hydrangea pruningPruningDepends on speciesBigleaf and oakleaf bloom on old wood (prune after flowering); panicle and smooth (Annabelle) bloom on new wood (late winter)Wrong timing means no flowers; reblooming bigleaf cultivars bloom on both
RosesPruningCutting canes to outward budsHybrid teas in early spring as buds swell; once-blooming climbers and ramblers right after floweringRemove suckers from below the graft union at their origin; no need to seal cuts
Conifers and evergreensPruningLight cuts into green growthPines: snap new "candles" by half in late spring; shear hedges early summerMost conifers (pine, spruce, arborvitae, juniper) will not resprout from bare old wood; yew can
Brambles (raspberry, blackberry)PruningCanes are biennial: first-year primocanes, second-year floricanesSummer-bearing: remove floricanes after harvest; fall-bearing: mow all canes in late winter for one fall cropLeaving dead floricanes harbors disease
GrapesPruningCane or spur pruning while dormantFruit forms on current-season shoots from 1-year-old wood; remove about 80 to 90% of last year's growthUnderpruned vines overcrop and ripen poorly; heavy "bleeding" sap in spring is harmless
Fruit-tree trainingTrainingShaping young treesCentral leader (apple, pear); modified leader; open center or vase (peach, plum) for lightWide crotch angles are strong; narrow V crotches split
Espalier, cordon, topiary, bonsai, pleaching, coppicing, pollardingTrainingFlat-trained on a wall; single-stem fruit tree; sheared shapes; miniature potted trees; interwoven branches; cut to ground; cut to head heightSpace-saving, decorative or wood-producing formsNeed regular, timed pruning; not all species tolerate coppicing
Tomato support; suckeringSupportStakes, cages or trellis; removing side shoots in leaf axilsIndeterminate vines keep growing and need tall support (sucker if staked); determinate bush types set fruit in one flush and need short cagesDo not sucker determinates (cuts yield); unsupported fruit rots on soil
TrellisingSupportVertical netting, strings or framesPole beans, peas, cucumbers, small melons; saves space, cleaner fruit, better airflowHeavy fruit needs slings; tendrils need thin supports
Tree staking and plantingPlantingPlanting with root flare at soil level in a hole 2 to 3 times as wide as the root ballBackfill with native soil; stake loosely only if needed and remove after about a yearPlanting too deep and girdling roots kill trees; rigid staking weakens trunks
Deadheading; disbuddingFlowersRemoving spent flowers; removing side buds to leave one terminal budDeadheading gives more bloom and stops self-sowing; disbudding gives one large exhibition flower (chrysanthemum, peony, dahlia, carnation, camellia)Leave seed heads for birds if wanted; disbudding means fewer flowers
PinchingFlowersRemoving the shoot tip with fingersReleases side buds for bushier plants (mums, basil, coleus, petunias)Stop pinching garden mums by about early July or flower buds are lost
Stem cuttingsPropagationRooting shoot pieces, usually with auxin rooting hormone (IBA, NAA)Softwood: late spring to early summer; semi-hardwood: mid to late summer (holly, azalea); hardwood: dormant season (willow, grape, forsythia, juniper)Need humidity (mist, plastic tent) and bottom heat; no fertilizer until rooted
Leaf and root cuttingsPropagationLeaf or leaf-petiole pieces; dormant root piecesLeaf: African violet, Rex begonia, snake plant, jade; root: horseradish, blackberry, oriental poppyLeaf cuttings of yellow-edged snake plant lose the edge (it is a chimera)
LayeringPropagationRooting a stem while still attachedSimple (bend a branch into soil), tip (black raspberry), serpentine (vines), mound or stool (apple rootstocks, currants), air (rubber plant, croton)Slow (one season or more); few plants per parent
Grafting and buddingPropagationScion (desired cultivar) or a single bud joined to a rootstock, cambium to cambiumWhip-and-tongue and cleft in late winter to early spring with dormant scion wood; bark graft in spring when bark slips; T (shield) budding in summer when the stock's bark slips (roses, fruit trees); chip budding when it does notOnly between close relatives; keep scion wood dormant, cool and moist; remove rootstock shoots; a graft union buried in soil lets the scion root and lose dwarfing
DivisionPropagationSplitting clumps into rooted piecesSpring bloomers in late summer or fall; summer and fall bloomers in spring; bearded iris after bloom in midsummerPeony eyes no more than about 2 in deep or they will not bloom; iris rhizome tops at the surface
Spring bulb plantingBulbsTulip, daffodil, crocus, hyacinth planted in fallWhen soil cools (below about 60 °F), weeks before the ground freezes; depth about 2 to 3 times the bulb's height (tulips and daffodils 6 to 8 in), pointed end upLeave foliage until it yellows (about 6 weeks) to refill the bulb; voles and squirrels eat tulips, not daffodils
Summer (tender) bulbsBulbsDahlia, gladiolus, canna, caladium, tuberous begoniaPlant after last frost in warm soil; in cold zones dig after frost blackens topsStore dry and cool, about 40 to 50 °F (caladiums warmer, at or above about 60 °F); freezing or damp storage rots them
Forcing bulbsBulbsMaking bulbs bloom indoors out of seasonPot in fall, chill about 12 to 16 weeks at about 35 to 45 °F, then bring to warmth and lightPaperwhites and amaryllis need no chilling; keep bulbs away from ripening fruit (ethylene)
Photoperiod forcingFlowersControlling day length to trigger bloomPoinsettia and Christmas cactus are short-day plants: about 14 h of unbroken darkness nightly for 8 to 10 weeks from about October 1; mums forced with blackout clothA single light flash during the night resets it
Overwintering perennialsWinterWinter mulch, hilling, bringing tender plants inMulch after the ground freezes to keep it frozen and prevent frost heaving; hill soil over rose crownsMulching early invites voles; potted plants' roots are far less hardy than in the ground
Winter protection of treesWinterTree wraps, white trunk paint, guards, burlap screensPrevents sunscald (southwest injury) on young thin-barked trees, rodent gnawing, and winter burn of evergreensRemove wraps in spring (insects, girdling); water evergreens before freeze-up
Frost dates and growing degree daysSite and timingAverage last spring and first fall frost; GDD = (high + low)/2 minus a base, often 50 °FPlant tender crops after the last frost; GDD and indicator-plant bloom (phenology, such as forsythia for crabgrass preventer) time planting and pest controlAverages, so frost is still possible after the date in about half of years
USDA hardiness zones; AHS heat zonesSite and timingAverage extreme winter minimum; average days above 86 °FChoose perennials that survive winter cold and summer heatZones ignore snow cover, rainfall and microclimate
Frost protectionFrost and seasonCovers, water and air movement on frost nightsCover in the evening with cloth reaching the ground (traps soil heat); water soil the day before; orchards use wind machines or sprinklers (water releases heat of fusion as it freezes)Plastic touching leaves conducts cold; sprinkling must continue until ice melts
Season-extension structuresFrost and seasonCold frame (bottomless box with clear lid); hotbed (same, heated by fresh manure or cables); row covers, cloches, low tunnels, Wall o' Water; high tunnel (unheated hoop house, crops in the ground)Hardening off, early and late crops, overwintering greens; floating row cover also excludes insects; high tunnels extend the season by weeks to monthsVent on sunny days or plants cook; remove covers from squash and melons at bloom for pollination; salts and pests build up in tunnels
Greenhouse climateGreenhouseHeated, vented structure (glass, polycarbonate, double polyethylene)Fan-and-pad evaporative cooling, shade cloth or whitewash, CO₂ enrichment (about 800 to 1,000 ppm), supplemental lightingHigh humidity and still air favor Botrytis and powdery mildew
Greenhouse sanitation and monitoringGreenhouse; IPMWeed-free floors, clean benches, screened vents, sticky cardsYellow cards catch whiteflies, aphids, fungus gnats, leafminers; blue cards catch thripsPests multiply year-round with no winter break
Hydroponic solution managementHydroponicsMonitoring the nutrient solution; the passive Kratky method leaves roots in a non-circulating tank with a growing air gapKeep pH about 5.5 to 6.5 and electrical conductivity (EC) in range; aerate; change or top up solution; Kratky needs no pump (lettuce, herbs)Root rot (Pythium) spreads through shared water; warm water holds less oxygen; Kratky suits best short, fast crops
AquaponicsHydroponicsFish tank plus hydroponic beds in one loopNitrifying bacteria turn fish ammonia into nitrate for plantsMust balance fish load, bacteria and plants; pesticides kill fish
Harvest indicatorsHarvestSigns of ripenessSweet corn: brown silks, milky kernel juice; watermelon: yellow ground spot, dried tendril; cantaloupe: full slip from vine; onions: tops fall over; potatoes: about 2 weeks after vines die; summer squash: small and glossyOvermature beans and okra get tough; corn sugar turns to starch soon after picking
Field heat removalHarvestCooling produce right after harvestHydrocooling (sweet corn), forced-air cooling (berries), vacuum cooling (lettuce), icing (broccoli)Every hour warm shortens shelf life
CuringHarvest and storageHolding crops warm or dry to heal skins and finish themSweet potatoes 80 to 85 °F, high humidity, about 1 week; winter squash and pumpkins about 80 to 85 °F for 10 days (not acorn); onions and garlic dried warm and airy 2 to 3 weeks; potatoes 1 to 2 weeks cool and humidUncured crops rot or shrivel in storage
Storage conditionsHarvest and storageMatching temperature and humidity to the cropCold and moist (about 32 °F, 90 to 95% RH): carrots, beets, cabbage, apples (a root cellar gives cool, humid storage); cool and dry: onions, garlic; potatoes about 40 to 45 °F, dark; sweet potatoes and winter squash about 50 to 60 °FPotatoes too cold turn sweet, and in light turn green; store apples apart from vegetables
Chilling injuryHarvest and storageDamage to tropical and subtropical produce above freezing (below about 50 °F)Store tomatoes, basil, bananas, cucumbers, peppers, sweet potatoes cool, not coldPitting, water soaking, poor flavor; tomatoes lose flavor in the refrigerator
Ethylene management; controlled atmosphereHarvest and storageRipening gas from apples, bananas, tomatoes; CA rooms with low O₂ and raised CO₂Ripen climacteric fruit in a bag with a banana; 1-MCP blocks ethylene; CA slows respiration so apples keep for monthsKeep ethylene producers away from carrots (bitter), lettuce (russet spotting), cut flowers and bulbs; too little O₂ causes fermentation
IPM framework and monitoringIPMPrevention, monitoring, thresholds, then the least-toxic effective controlScout and identify with sticky cards, pheromone traps, degree-day models; act only at an action threshold; combine cultural, mechanical, biological, chemical tactics; time sprays to vulnerable life stagesNot "no pesticides"; misidentifying the pest wastes every later step; sex-pheromone traps usually catch only males and measure, not control
Cultural controls; resistant cultivarsIPM; culturalRotation, spacing, planting time, watering at soil level, healthy soil; seed-tag resistance codesTomato VFN(T): Verticillium wilt, Fusarium wilt, root-knot Nematodes, Tobacco mosaic virus; late squash avoids squash vine borer; airflow reduces fungiResistance covers listed strains only; needs planning ahead
Mechanical and physical controlsIPM; mechanicalHand-picking, row covers, cutworm collars, water sprays, copper tape, beer traps, barriersExclude or remove pests without chemicals; strong water spray knocks off aphids and mitesLabor-intensive; row covers must be sealed and timed before pests arrive
Lady beetles; green lacewingsIPM; biologicalHippodamia convergens adults and larvae; Chrysoperla larvae ("aphid lions")Aphids; lacewings also take mealybugs, mites, small caterpillars, insect eggsReleased lady beetles often fly off; their larvae look like tiny alligators, not pests; adult lacewings eat nectar and pollen
Parasitoid waspsIPM; biologicalTiny wasps that lay eggs in or on hostsTrichogramma: moth eggs; Encarsia formosa: greenhouse whitefly; Aphidius: aphids (leave tan "mummies"); Cotesia: hornworms (white cocoons on the back)Broad-spectrum sprays kill them; leave parasitized hornworms
Other predatorsIPM; biologicalPredatory mites (Phytoseiulus persimilis), minute pirate bugs (Orius), mealybug destroyer (Cryptolaemus)Spider mites; thrips; mealybugsWork best in greenhouses with early release
Beneficial nematodesIPM; biologicalSteinernema and Heterorhabditis that carry insect-killing bacteriaWhite grubs, root weevils, fungus gnat larvae, soil-dwelling caterpillarsApply to moist soil in the evening; UV and drying kill them
Bacillus thuringiensis (Bt)IPM; biologicalBacterium whose Cry toxin is activated in alkaline insect gutsvar. kurstaki: caterpillars; israelensis: mosquito, black fly and fungus gnat larvae; tenebrionis: Colorado potato beetle larvaeMust be eaten; breaks down in sunlight in days; also kills butterfly caterpillars
Milky spore and other microbialsIPM; biologicalPaenibacillus popilliae; Beauveria bassiana (insect-killing fungus); Trichoderma and Bacillus subtilis (disease suppressors)Japanese beetle grubs; whiteflies, thrips, aphids; root and leaf diseasesMilky spore is specific to Japanese beetle and takes years; fungi need humidity; most work as preventives
Insecticidal soapIPM; chemical (low-risk)Potassium salts of fatty acidsSoft-bodied pests (aphids, mites, whiteflies, mealybugs); contact onlyNo residual effect; must hit the pest; burns some plants in heat
Horticultural oilIPM; chemical (low-risk)Refined petroleum or plant oil; dormant or summer ratesSmothers scale, mites, eggs; dormant spray on fruit treesNot above about 90 °F, on stressed plants, or near sulfur use; removes blue color from blue spruce
Neem; pyrethrins; spinosadIPM; chemical (botanical, microbial)Neem seed extract (azadirachtin); pyrethrum daisy flower extract; fermentation product of a soil bacteriumRepellent and growth regulator; fast knockdown; caterpillars, thrips, leafminersPyrethrins and wet spinosad harm bees and fish; pyrethroids are synthetic relatives
Copper, sulfur, Bordeaux mixtureIPM; chemical (fungicide)Copper sulfate plus lime (Bordeaux, 1880s, grape downy mildew); elemental sulfurProtectant fungicides and bactericides; must be on before infectionCopper builds up in soil; sulfur burns plants in heat or after oil sprays
Systemic insecticidesIPM; chemicalAbsorbed and moved in the plant (neonicotinoids such as imidacloprid)Long control of sap-feeders and borersReach pollen and nectar, harming bees; not on blooming plants
Pesticide label rules; resistance managementIPM; chemical"The label is the law"; rotating modes of actionSignal words in rising toxicity: Caution, Warning, Danger; REI (re-entry interval); PHI (pre-harvest interval); rotation slows resistance in mites, whiteflies, weedsUsing on a crop not listed is illegal; repeating one product selects resistant survivors
Diatomaceous earth; kaolin clayIPM; mechanicalSharp fossil diatom shells; fine white clay filmAbrades and dries soft insects; clay coats fruit and repels pests (apple, pear)DE useless when wet and harms beneficial insects; use food-grade, not pool-grade
Sanitation; roguingIPM; sanitationRemoving diseased leaves, fallen fruit, debris and weeds; pulling infected or off-type plantsRemoves overwintering pests and spores; disinfect tools with 70% alcohol or 10% bleach between plants; rogue virus, clubroot or wilt casesBag, do not compost; bleach corrodes tools; do not work among wet plants (spreads bacteria); smokers wash hands near tomatoes (tobacco mosaic)
Weed control (non-chemical)WeedsMulch, hoeing, hand-pulling, stale seedbed, flame weeding, solarizationRemove weeds before they set seed ("one year's seeding, seven years' weeding")Tilling brings buried weed seeds to the surface
Herbicide typesWeedsPre-emergent (stops seeds germinating); post-emergent; selective (2,4-D on broadleaves in lawns) vs. non-selective (glyphosate)Crabgrass preventer goes on as soil reaches about 55 °F (forsythia bloom)Pre-emergents also stop grass seed; drift damages grapes and tomatoes
Soil testingSoil testingLab test from mixed subsamples, 0 to 6 in deep in gardens (shallower in lawns)Every 3 to 4 years, often in fall; reports pH, lime need, P, K, Ca, Mg, organic matter, CECUse a clean plastic bucket (galvanized adds zinc); routine tests usually skip nitrate (it changes too fast)
Measuring pH; indicator plantsSoil testingpH meter or indicator dyes in a soil-water slurry; plants whose color reports soil chemistryEach unit is 10 times the acidity; most crops like 6.0 to 7.0; bigleaf hydrangea is blue in acid soil (Al available), pink in neutral to alkaline; red cabbage juice is a kitchen indicatorCheap probe meters are unreliable; buffer pH, not soil pH, sets lime rate; white hydrangeas do not change
Texture testsSoil testingRibbon (feel) test; jar (settling) testIn the jar, sand settles in a minute, silt in hours, clay in daysOrganic matter floats and skews readings
Cool-season grassesLawnKentucky bluegrass, tall fescue, fine fescues, perennial ryegrassGrow best about 60 to 75 °F; spring and fall growth; seed in late summer to early fall; most N in fallGo dormant (brown) in summer drought
Warm-season grassesLawnBermudagrass, zoysia, St. Augustine, centipede, bahia, buffalograssGrow best about 80 to 95 °F; plant and fertilize late spring to summerBrown and dormant after frost; St. Augustine is planted as sod or plugs, not seed
MowingLawnCutting height by speciesNever remove more than one-third of the blade; roughly tall fescue 3 to 4 in, Kentucky bluegrass 2.5 to 3.5 in, bermudagrass and zoysia 1 to 2 in, St. Augustine 2.5 to 4 in; sharp blade; alternate direction; leave clippingsScalping weakens turf and lets weeds in; dull blades shred tips
Core aeration; dethatchingLawnPulling small soil plugs; vertical mowing or raking out thatchRelieve compaction or thatch over about 1/2 in while grass grows strongly (fall or spring for cool-season, late spring or summer for warm-season)Spike aerators can increase compaction; heavy dethatching tears turf; overfertilizing and overwatering build thatch
Overseeding and establishmentLawnSeed, sod, plugs or sprigsOverseed thin cool-season lawns in early fall; sod gives instant cover; good seed-to-soil contact and constant light moisturePre-emergent herbicides block new seed
Lawn fertilizing and wateringLawnAbout 1 lb N per 1,000 ft² per feeding; about 1 in water per weekDeep, infrequent early-morning wateringClippings and leftover fertilizer on pavement wash into streams
Xeriscaping; hydrozoningLandscapeWater-wise landscaping (Denver Water, 1981); grouping plants by water needSeven principles: plan and design, improve soil, limit turf, choose suitable plants, efficient irrigation (hydrozones), mulch, maintainNot "zero-scape" (gravel only); plants still need watering to establish
Rain gardenLandscapeShallow planted depression that catches roof and pavement runoffFilters and soaks in stormwater; native plants tolerant of wet and dryMust drain within a day or two; keep away from foundations

Aquaculture

Aquaculture is the farming of aquatic organisms (fish, shellfish and aquatic plants and algae) under controlled conditions; mariculture is aquaculture in seawater. It now supplies about half of the fish and seafood people eat. The main systems:

SystemDescriptionNotes
PondsEarthen ponds stocked with fish such as carp and tilapia, often fertilized to grow plankton as foodThe oldest and most widespread system; a vital, low-cost protein source in developing countries, especially in Asia
Raceways and flow-throughLong channels with a constant flow of fresh waterTrout
Net pens and cagesEnclosures in lakes or the seaSalmon; risks include escapes, disease and lice spreading to wild fish, and nutrient pollution
Recirculating aquaculture systems (RAS)Indoor tanks whose water is filtered and reusedMechanical filtration removes solids; a biofilter of nitrifying bacteria converts toxic ammonia to nitrite and then nitrate; aeration and UV sterilization keep water clean. Nitrate is never converted back to ammonia in the loop
Integrated multi-trophic aquacultureFish with seaweed and filter-feeding shellfishThe seaweed and shellfish take up the fish farm's waste nutrients
Rice-fish farmingFish raised in flooded rice paddiesAn old Asian practice; fish eat pests and weeds and fertilize the rice

Aquaponics couples aquaculture with hydroponics in one recirculating loop. Fish excrete ammonia (through gills and in waste); Nitrosomonas-type bacteria oxidize it to nitrite and Nitrobacter/Nitrospira-type bacteria oxidize that to nitrate; the plants absorb the nitrate as their nitrogen fertilizer and return cleaner water to the fish. Tilapia with lettuce and herbs is the textbook pairing.

The plant side of aquaculture is mostly seaweed farming: nori (Pyropia/Porphyra, a red alga) for sushi wraps; kombu (Saccharina) and wakame (Undaria), brown algae used as food; red algae such as Gracilaria, Gelidium, Kappaphycus and Eucheuma harvested for the gelling agents agar (also the base of microbiology and plant tissue-culture media) and carrageenan; and brown algae as the source of alginate. Freshwater crops include watercress, water spinach, lotus and duckweed (Lemna and Wolffia, fast-growing floating plants used as animal feed). Aquaculture's problems mirror agriculture's: nutrient runoff and eutrophication, disease and antibiotic use, habitat loss (mangroves cleared for shrimp ponds) and dependence on wild-caught fish for feed.

Plant biochemistry

Molecule classPlant examplesWhat to know
CarbohydratesStarch, cellulose, sucrose, pectin, hemicellulose, calloseStarch is α-glucose: amylose (unbranched α-1,4 chains) and amylopectin (α-1,4 with α-1,6 branches); it stains blue-black with iodine. Cellulose is β-D-glucose in β-1,4 chains that pack into microfibrils; most animals cannot digest it without help from gut microbes. Sucrose (glucose + fructose) is the transport sugar in phloem: it is non-reducing, so it is chemically stable in transit, and it carries a lot of energy per osmotically active molecule. Pectin is a chain of galacturonic acid units (α-1,4 linked), acidic and water-soluble; it gels with sugar and acid (jams) and glues cells together in the middle lamella. Callose (β-1,3 glucan) seals sieve plates and wounds. Plants store starch, not glycogen
LipidsSeed oils (triglycerides), cutin, suberin, waxes, phospholipids; carotenoids and sterols are lipid-soluble terpenoidsCutin and waxes build the cuticle; suberin waterproofs cork and the endodermis (the Casparian strip itself is mainly lignin; suberin lamellae are laid down later)
Proteins and enzymesRuBisCO, nitrogenase, α-amylase, storage proteins in seeds (gluten in wheat)RuBisCO is the most abundant protein on Earth, partly because it is slow and inefficient. An enzyme's protein part is the apoenzyme; with its cofactor (a metal ion or coenzyme) it is the active holoenzyme
LigninWood, xylem walls, sclerenchymaA phenolic polymer built from three monolignols (p-coumaryl, coniferyl and sinapyl alcohols); the second most abundant plant polymer after cellulose; stains red with phloroglucinol
Nucleic acidsDNA in the nucleus, chloroplasts and mitochondriaCarry the genetic information
PigmentsChlorophyll a and b, carotenoids, anthocyanins, betalains, phytochromeChlorophyll has magnesium at its center; anthocyanins in vacuoles change color with pH; betalains (the red of beets) replace anthocyanins in the beet and cactus order; phytochrome switches between red- and far-red-absorbing forms

Common lab tests: iodine (starch, blue-black), Benedict's reagent (reducing sugars, brick red when heated), biuret (protein, violet), Sudan stains (lipids), phloroglucinol or safranin (lignin, red).

Pathways plants have and animals lack. The Calvin cycle (carbon fixation); the glyoxylate cycle, which runs in the glyoxysomes of oily germinating seeds and turns fat (via acetyl-CoA) into sugar; the shikimate pathway, which makes the aromatic amino acids phenylalanine, tyrosine and tryptophan (and is the target of glyphosate); the pathway runs from shikimate to chorismate, which branches to tryptophan (via anthranilate) and to prephenate; in plants prephenate is mainly transaminated to arogenate, which arogenate dehydratase turns into phenylalanine and arogenate dehydrogenase into tyrosine; and nitrate and sulfate assimilation (nitrate reductase, nitrite reductase). Phenylalanine feeds the phenylpropanoid pathway to lignin, flavonoids and many other phenolics; tyrosine feeds the benzylisoquinoline alkaloids (morphine, codeine, berberine), betalain pigments, and vitamin E and plastoquinone; tryptophan feeds auxin.

Other biochemistry facts tests ask. Cellulose synthase rosettes in the plasma membrane take UDP-α-glucose from the cytosol and extrude β-1,4 chains straight into the wall (the enzyme inverts the α-linked glucose of UDP-glucose into a β linkage, and in a β-1,4 chain every other glucose is flipped 180°), so straight chains hydrogen-bond side by side into microfibrils; pectin and hemicellulose are made in the Golgi instead and delivered by vesicles. The smooth ER makes lipids and detoxifies drugs and other foreign compounds. Enzymatic browning of cut apples, pears and avocados is caused by polyphenol oxidase (catecholase) oxidizing phenolics; lemon juice (ascorbic acid and acidity) slows it, and the non-browning Arctic apple silences the enzyme. Competitive inhibitors resemble the substrate and bind the active site; noncompetitive inhibitors bind elsewhere and change the enzyme's shape. Fats are first cut into two-carbon acetyl-CoA units by β-oxidation, which in plants runs in peroxisomes and glyoxysomes (not mainly in mitochondria, as in animals) by four repeated steps: oxidation (acyl-CoA oxidase, which makes H₂O₂), hydration, a second oxidation (making NADH) and thiolysis.

Primary metabolites (sugars, amino acids, lipids, nucleotides) are needed by every cell for growth and reproduction; secondary metabolites are not. In agriculture, a crop's primary product is what it is grown for (grain, fiber) and byproducts are useful materials left over from processing (straw, bran, cottonseed oil and meal, bagasse from sugarcane, soybean meal and lecithin). Secondary metabolites are compounds not needed for basic growth, usually used for defense or signaling, and they are the source of most plant drugs:

FamilyBuilt fromExamples
AlkaloidsContain nitrogen; made from amino acids; usually bitter and often toxicCaffeine, nicotine, morphine, codeine, quinine, atropine, scopolamine, cocaine, colchicine, vincristine, solanine (a glycoalkaloid)
Terpenoids (isoprenoids)Five-carbon isoprene units: C₁₀ monoterpenes, C₁₅ sesquiterpenes, C₂₀ diterpenes, C₃₀ triterpenes, C₄₀ tetraterpenesMenthol and limonene (C₁₀); artemisinin and parthenolide (C₁₅); paclitaxel and gibberellins (C₂₀); sterols and saponins (C₃₀); carotenoids (C₄₀); natural rubber (polyterpene); the hormones gibberellin, ABA, brassinosteroids and strigolactones
PhenolicsAromatic rings with -OH groups, mostly from the shikimate and phenylpropanoid pathwaysLignin, tannins (astringent, bind proteins), flavonoids (anthocyanins; flavonols, which give white and ivory flowers their color and absorb UV; isoflavones), lignans, coumarins, salicylic acid
GlucosinolatesSulfur-containing glucosidesThe sharp "mustard oil" taste of mustard, horseradish and cabbage, released when tissue is crushed
Cyanogenic glycosidesRelease hydrogen cyanide when cells are damagedCassava, bitter almonds, seeds of apples and cherries

The flavonoid pathway starts from phenylalanine: phenylalanine ammonia-lyase (PAL) removes ammonia to make cinnamic acid, which is hydroxylated to p-coumaric acid and activated to p-coumaroyl-CoA; chalcone synthase joins it with three malonyl-CoA to make a chalcone, which closes into the flavanone naringenin, the branch point for flavonols (kaempferol, quercetin), anthocyanins and isoflavones. The shikimate pathway itself begins with PEP and erythrose-4-phosphate. Animals cannot make phenylalanine, so people get it from protein foods (meat, fish, eggs, dairy, soy, legumes and nuts) and from the sweetener aspartame, which is why aspartame products carry a warning for people with phenylketonuria. Phytoestrogens are plant compounds that weakly mimic estrogen: isoflavones (genistein and daidzein in soy and red clover), lignans (flaxseed) and coumestans. They are studied for menopausal symptoms, bone health and hormone-related cancers.

Plants in medicine and environmental management

DrugPlant sourceUse
AspirinDeveloped from salicin in willow bark (Salix alba, white willow) and salicylates in meadowsweet (Spiraea, which gave aspirin its name)Pain, fever, inflammation; low doses prevent blood clots
QuinineCinchona barkMalaria
ArtemisininSweet wormwood (Artemisia annua), a traditional Chinese remedyMalaria (Nobel Prize 2015 for Tu Youyou)
Digoxin, digitoxinFoxglove (Digitalis purpurea, D. lanata)Heart failure and irregular heartbeat
Morphine, codeineOpium poppy (Papaver somniferum)Severe pain; cough
Paclitaxel (Taxol)Pacific yew (Taxus brevifolia) barkBreast, ovarian and other cancers
Vincristine, vinblastineMadagascar periwinkle (Catharanthus roseus)Leukemia and lymphoma
ReserpineRauvolfia serpentinaHigh blood pressure
AtropineDeadly nightshade (Atropa belladonna)Dilates pupils, speeds a slow heart, dries up mucus and saliva before surgery; antidote to nerve agents
ScopolamineNightshade relatives (Datura, henbane)Motion sickness
ColchicineAutumn crocus (Colchicum)Gout; also doubles chromosomes in plant breeding
GalantamineSnowdrops and daffodilsAlzheimer's disease
EphedrineEphedra (ma huang)Decongestant, asthma
CocaineCoca (Erythroxylum coca)Local anesthetic
MetforminDerived from galegine in French lilac (Galega officinalis)Type 2 diabetes
EtoposideMayapple (Podophyllum)Cancers

Folk and herbal remedies tests ask about: clove oil (eugenol) is an analgesic and antiseptic used on toothaches, and peppermint oil (menthol) is cooling and mildly numbing; aloe vera gel soothes and moisturizes minor burns and sunburn and reduces inflammation, but it does not undo sun damage or cure the burn; feverfew (containing parthenolide, flavonoids and volatile oils) is used against migraine; evening primrose oil, rich in gamma-linolenic acid, is used for PMS symptoms and eczema (evidence is weak); St. John's wort for mild depression (it speeds the breakdown of many prescription drugs); ginkgo leaf extract, feverfew, garlic and ginger can increase bleeding risk with the blood thinner warfarin; capsaicin from chili peppers in pain creams; echinacea for colds. Onions and garlic (Allium) contain sulfur compounds such as allicin (released when garlic is crushed) that are antimicrobial, and they are studied for modestly lowering blood pressure and cholesterol and for anti-inflammatory flavonoids such as quercetin. Ginseng (Panax) is a traditional Chinese tonic used for fatigue and energy, immunity, blood sugar, memory and digestion. Dandelion leaves and roots are traditional diuretics (its French name, pissenlit, says so), the young leaves are eaten as greens and the roasted root is a coffee substitute. Other common herbal uses: ginger for nausea and motion sickness, milk thistle (silymarin) for the liver, peppermint oil for irritable bowel symptoms, chamomile as a calming tea, valerian for sleep, ginseng as a tonic, turmeric (curcumin) as an anti-inflammatory, senna and psyllium as laxatives, and garlic for cardiovascular health; for most of these the evidence ranges from modest to weak. Herbs have been used in cooking and medicine for thousands of years, in traditions such as Ayurveda (India, about 3,000 years) and traditional Chinese medicine.

Poisonous plants are the flip side of medicinal ones, and many are common ornamentals:

PlantToxic part and compoundEffect
OleanderAll parts; cardiac glycosides (oleandrin)Heart rhythm disturbances; dangerous even in small amounts
Foxglove, lily of the valleyAll parts; cardiac glycosidesHeart effects (foxglove is the source of digoxin)
Yew (Taxus)Seeds and foliage (not the red aril's flesh); taxine alkaloidsHeart failure
Castor beanSeeds; ricinSevere poisoning if chewed
Rhododendron and azaleaLeaves, nectar; grayanotoxins"Mad honey" poisoning, heart and nerve effects
Dieffenbachia (dumb cane), philodendronLeaves; calcium oxalate raphidesPainful mouth and throat swelling
DaffodilBulbs above all; lycorineVomiting
Water hemlock; poison hemlockRoots above all; all parts; cicutoxin; coniineSeizures; paralysis (poison hemlock killed Socrates)
Jimsonweed (Datura), deadly nightshadeAll parts; atropine, scopolamineDelirium, racing heart
RhubarbLeaf blades; oxalic acidKidney damage (the petioles are eaten)
PoinsettiaMilky sapOnly mild irritation; its deadly reputation is a myth

Plants and plant foods dangerous to pets include grapes and raisins (kidney failure in dogs), onions, garlic and chives (red-cell damage in dogs and cats), true lilies and daylilies (kidney failure in cats, even from pollen), sago palm (cycasin, liver failure), chocolate (theobromine), macadamia nuts (weakness and tremors in dogs) and avocado (persin, especially to birds).

Ethnobotany studies how cultures use plants, and many drugs were found by following traditional uses. Pharmacognosy is the study of drugs from natural sources (the term was coined by C. A. Seydler in Analecta Pharmacognostica, 1815). It includes checking crude drug quality against adulteration: deliberate substitution with a substandard or inferior drug (one species passed off as a better one), with an exhausted drug whose active compounds were already extracted, with a superficially similar plant, or with an artificial imitation (sophistication, deliberate faking), and accidental problems such as admixture of other plant parts, confusion over common names, lack of knowledge of the authentic plant, and spoilage in storage.

In environmental management, plants clean, hold and restore land. Phytoremediation uses plants to deal with contamination; plants that take up unusually large amounts of a metal are hyperaccumulators. Harvesting hyperaccumulator shoots to recover and sell the metal (nickel, for example) is called phytomining. Fungi do similar work in mycoremediation: wood-decay (white-rot) fungi break down petroleum hydrocarbons, pesticides and dyes with the same enzymes they use on lignin.

MethodWhat the plant doesExample
PhytoextractionAbsorbs metals and stores them in harvestable shootsIndian mustard (Brassica juncea) for lead, cadmium and other metals; brake fern (Pteris vittata) for arsenic; alpine pennycress for zinc and cadmium
RhizofiltrationRoots absorb or trap contaminants from waterSunflowers in contaminated ponds near Chernobyl
PhytostabilizationRoots immobilize contaminants in the soilGrasses on mine tailings
PhytodegradationPlant enzymes break down organic pollutantsPoplars degrading solvents such as TCE
PhytovolatilizationConverts a contaminant to a gas released from leavesSome plants with selenium or mercury

Plants also control erosion (roots binding slopes, fibrous-rooted grasses holding topsoil, cover crops), filter runoff in riparian buffers and constructed wetlands, cool cities and store carbon. Shelterbelts (windbreaks) of trees and shrubs slow the wind across fields, cutting soil erosion and crop water loss, trapping snow and sheltering livestock; the U.S. planted thousands of miles of them across the Great Plains after the Dust Bowl. Desertification is driven by overgrazing, deforestation, poor irrigation that salts the soil, intensive monoculture and drought; diversified farming, cover crops and replanting work against it. Managing invasive species and using prescribed burns in fire-adapted forests are part of the same topic (see Plants in ecosystems).

Importance of plant diversity

Botanists have described roughly 390,000 species of vascular plants (most of them flowering plants), and estimates published by the Royal Botanic Gardens, Kew put roughly two in five at risk of extinction. Diversity matters at three levels: genetic diversity within a species, species diversity within a community, and ecosystem diversity across a landscape. The sum of all the plants and animals of a region is its biota (flora plus fauna).

Genetic diversity lets a species adapt: some individuals carry genes that resist a new disease, pest or climate. Genetic uniformity is the classic risk. The Irish potato famine struck a crop grown largely from a few clonal varieties; the Gros Michel banana was wiped out commercially by Panama disease (a Fusarium wilt), and its Cavendish replacement is now threatened by a new strain, which is why bananas are said to face extinction; in 1970, southern corn leaf blight spread through U.S. maize that shared one susceptible cytoplasm. Crop breeders rely on crop wild relatives and on landraces from Vavilov's centers of origin, the regions where crops were first domesticated.

Diverse plant communities are generally more productive and more stable (David Tilman's long-running grassland experiments at Cedar Creek, Minnesota showed that plots with more species produced more biomass and held their yield steadier through drought), support more pollinators and other wildlife, resist invasion better, and provide ecosystem services: food, medicine, fiber, clean water, soil formation and erosion control, pollinator habitat and climate regulation. Losing diversity means less resilient food supplies, lost sources of future medicines (most plant species have never been screened for drugs), weaker ecosystems and more erosion and flooding.

A biodiversity hotspot (Norman Myers's concept, as defined by Conservation International) is a region with at least 1,500 endemic vascular plant species (found nowhere else) that has lost at least 70% of its original habitat, such as Madagascar, the California Floristic Province and the Cape region of South Africa. Seed banks have a heroic history: during the World War II siege of Leningrad, scientists guarding Vavilov's seed collection starved to death rather than eat the seeds, preserving its genetic diversity. Threats are habitat loss (the biggest), invasive species, pollution, overharvesting and climate change. Conservation is in situ (protecting plants where they grow: reserves, national parks, habitat restoration) or ex situ (outside their habitat: seed banks such as the Svalbard Global Seed Vault, opened in 2008, and Kew's Millennium Seed Bank; botanical gardens; tissue culture and cryopreservation for species whose seeds cannot be dried). International trade in endangered plants such as many orchids and cacti is regulated by CITES.

Botanical vocabulary

The table below is an alphabetical glossary of the morphology, anatomy, life-history and horticulture terms that turn up on Botany tests. Scan the Category column to review a whole family of terms at once (all corolla shapes, all placentation types, all Raunkiær life forms), or look up a single unfamiliar word from a question stem. Each Example is a plant or structure you can picture, which is often exactly what an identification or matching question asks for.

ReferenceBotanical vocabulary· 339 rows

Categories group related terms (Flower, Corolla, Anther, Ovary position, Placentation, Inflorescence, Fruit, Seed, leaf terms, Stem, Root, Bud and twig, Stele, Anatomy, Growth form, Raunkiær life form, Life history, Ecology, Pollination, Dispersal, Reproduction, Horticulture). Synonyms appear in parentheses in the Meaning.

339 rows
TermCategoryMeaningExample
Accessory fruitFruitFruit whose flesh comes mainly from tissue other than the ovary, such as receptacle or hypanthiumStrawberry; apple
AcheneFruitDry, indehiscent, one-seeded fruit with the seed attached at one point"Seeds" on a strawberry; buttercup
AcicularLeaf shapeNeedle-shapedPine needles
ActinomorphicSymmetryRadially symmetric; divisible into equal halves along several planesButtercup; rose
ActinosteleSteleProtostele whose xylem is star-shaped in cross section, phloem between the armsEudicot root; Psilotum stem
AcuminateLeaf apexTapering to a long, drawn-out pointDrip tip of sacred fig (Ficus religiosa)
AcuteLeaf apexSharp-pointed with straight sides meeting at less than 90 degreesRed maple lobe tips
Adnate antherAntherAnther attached along its whole length to the filamentMichelia; Ranunculus
Adventitious budBud and twigBud arising somewhere other than a leaf axil or shoot tip, such as on a root or leafRoot suckers of aspen; plantlets on Kalanchoe leaves
Adventitious rootRootRoot arising from a stem or leaf rather than from the radicleCorn prop roots; roots on a stem cutting
AerenchymaAnatomyParenchyma with large air spaces that carries oxygen to submerged organsWater lily petioles; rice roots
Aerial rootRootRoot growing in air, often absorbing moisture or anchoringEpiphytic orchids; banyan
AestivationFlowerArrangement of sepals or petals in the unopened budTwisted in hibiscus; vexillary in pea
Aggregate fruitFruitFruit formed from many separate carpels of one flowerRaspberry, blackberry (drupelets); magnolia
Albuminous seedSeedMature seed that keeps endosperm as food storage (endospermic)Corn; castor bean; wheat
AllelopathyEcologyRelease of chemicals that inhibit nearby plantsJuglone from black walnut
AlternateLeaf arrangementOne leaf per nodeOak; elm; birch
AndroeciumFlowerAll the stamens of a flower; the male whorlSix stamens of a lily
AnemochoryDispersalSeed or fruit dispersal by windDandelion pappus; maple samara
AnemophilyPollinationWind pollination; flowers small, petal-poor, with lots of light pollenCorn; grasses; oak; pine
AnnualLife historyCompletes its life cycle from seed to seed in one growing seasonCorn; marigold; sunflower
ApocarpousFlowerCarpels of the gynoecium separate from each otherButtercup; magnolia; strawberry
ApomixisReproductionProduction of seeds without fertilization (usually also without meiosis); offspring are clonesDandelion; many citrus; Kentucky bluegrass
ArilSeedFleshy outgrowth partly or wholly covering a seed, usually from the funiculusRed cup of yew; mace of nutmeg; lychee flesh
AristateLeaf apexEnding in a bristle or awnBristle-tipped lobes of red oak
AtactosteleSteleVascular bundles scattered through the ground tissue, no pith-cortex boundaryCorn stem; most monocot stems
AuricleLeaf partSmall ear-like lobe at the base of a blade; in grasses, where blade meets sheathClasping auricles on barley leaves
AutogamyPollinationPollen moves to the stigma of the same flower (self-pollination)Pea; wheat; tomato
Axile placentationPlacentationOvules on a central axis of a compound ovary divided by septa into loculesTomato; lily; orange
Axillary budBud and twigLateral bud in the angle (axil) between a leaf and the stemBud above each leaf scar on a twig
BannerCorollaLarge upper petal of a papilionaceous flower (also standard or vexillum)Pea; sweet pea
Basal placentationPlacentationOvule(s) attached at the base of a one-chambered ovarySunflower; buckwheat
BasifixedAntherFilament attached to the base of the antherBrassica; Datura
BerryFruitFleshy fruit with the entire pericarp soft, usually several seedsTomato; grape; blueberry
BiennialLife historyGrows leaves the first year, flowers and dies the second, usually after winter coldCarrot; beet; foxglove
BilabiateCorollaTwo-lipped corolla, upper and lower lipsDeadnettle (Lamium); sage (Salvia); snapdragon
BipinnateCompound leafTwice pinnately compound; leaflets borne on secondary rachisesMimosa tree (Albizia); Kentucky coffeetree
BoltingHorticultureRapid elongation of a flowering stem, often from long days or heat, ruining leafy cropsLettuce and spinach in summer
BractLeaf modificationReduced or modified leaf associated with a flower or inflorescenceRed "petals" of poinsettia; dogwood white "petals"
Bud scaleBud and twigModified leaf protecting a dormant budOverlapping scales on an oak bud
Bud scale scarBud and twigRing of scars left by terminal bud scales; spacing marks yearly growthRings on a buckeye or horse chestnut twig
BulbStem modificationShort underground stem bearing fleshy storage leavesOnion; tulip; lily
Bundle scarBud and twigDots in a leaf scar where vascular bundles entered the leafHorseshoe-shaped leaf scar of horse chestnut
CampanulateCorollaBell-shapedBellflower (Campanula); bluebells
CapitulumInflorescenceHead: dense cluster of sessile florets on a flat receptacle, often with an involucreSunflower; daisy; dandelion
CapsuleFruitDry dehiscent fruit from a compound ovary (two or more carpels)Poppy; lily; cotton
Carnivorous plantGrowth formPlant that traps and digests animals, usually for nitrogen in poor soilsVenus flytrap; pitcher plant; sundew
CarpelFlowerOvule-bearing unit of the gynoecium (a modified megasporophyll)One carpel forms a pea pod
CaruncleSeedSpongy outgrowth of the seed coat near the micropyleCastor bean
CaryopsisFruitGrain: dry one-seeded fruit with the seed coat fused to the pericarpCorn kernel; wheat; rice
CatkinInflorescenceDangling spike of small unisexual, petal-less flowers (ament)Willow; birch; male oak flowers
ChamaephyteRaunkiær life formPerennating buds on shoots close to the ground (roughly below 25 cm; a few sources use 30 to 50 cm)Thyme; heather; moss campion
Chilling requirementHorticultureHours of cool temperature a plant needs before buds break or it flowers properlyApple, peach and blueberry cultivars
ChiropterophilyPollinationBat pollination; large pale night-opening flowers, musty odorAgave; saguaro; baobab
CladodeStem modificationFlattened leaf-like stem of one or few internodes (cladophyll)Asparagus "needles"; butcher's broom
CleistogamyPollinationSelf-pollination inside flowers that never openViolets; henbit; dayflower (Commelina)
ColeoptileSeedProtective sheath covering the shoot tip of a grass seedlingOat and corn seedlings
Complete flowerFlowerHas all four whorls: sepals, petals, stamens, carpelsLily; rose; cherry
Compound leafCompound leafBlade divided into separate leaflets on one petiole; bud only at base of whole leafAsh; clover; horse chestnut
Compound umbelInflorescenceUmbel whose rays each end in a smaller umbelCarrot; dill; Queen Anne's lace
CoppicingHorticultureCutting trees to the ground repeatedly so they resprout many stemsWillow and hazel coppice
CordateLeaf shapeHeart-shaped, with a notch at the baseRedbud; basswood; morning glory
CormStem modificationShort, solid, upright underground stem with thin papery leavesGladiolus; crocus; taro
CoronaFlowerCrown-like outgrowth between corolla and stamensDaffodil trumpet; passionflower filaments
CorymbInflorescenceFlat-topped indeterminate cluster; lower pedicels longerHawthorn; candytuft
CotyledonSeedSeed leaf of the embryo; one in monocots, two in eudicotsTwo halves of a bean seed
CrenateLeaf marginMargin with rounded, scalloped teethKalanchoe pinnata; ground ivy
CruciformCorollaFour petals arranged in a crossMustard; cabbage; radish
CryptophyteRaunkiær life formPerennating buds below ground or under water; includes geophytes, helophytes, hydrophytesTulip; cattail; water lily
CulmStemJointed stem of a grass or sedgeBamboo cane; wheat straw
CultivarHorticultureCultivated variety selected and kept for its traits; written in single quotesMalus domestica 'Honeycrisp'
CuneateLeaf baseWedge-shaped, tapering to a point at the baseGinkgo fan
CuttingHorticulturePiece of stem, leaf or root rooted to make a new plant; softwood (new spring growth) or hardwood (dormant mature wood)Coleus or willow stem cuttings
CyathiumInflorescenceCup of bracts holding one naked female flower and many reduced male flowersPoinsettia (Euphorbia)
CymeInflorescenceDeterminate cluster; the terminal (central) flower opens firstChickweed; Sweet William
CypselaFruitAchene-like fruit from an inferior ovary, often topped by a pappusSunflower "seed"; dandelion
Damping-offHorticultureSeedling collapse at the soil line caused by soil fungi and oomycetesPythium on seedling trays
DeciduousLife historySheds all leaves for part of the yearMaple; oak; larch (a deciduous conifer)
DecumbentHabitLying on the ground but with the tip turned upwardPurslane; many clovers
DecussateLeaf arrangementOpposite pairs, each pair at right angles to the nextMint; coleus
DehiscentFruitSplitting open at maturity to release seedsPea pod; milkweed follicle
DeltoidLeaf shapeTriangularEastern cottonwood (Populus deltoides)
DentateLeaf marginTeeth pointing outward, perpendicular to the marginArrowwood viburnum (Viburnum dentatum)
Determinate growthHorticultureShoot ends in a flower cluster and stops elongating; fruit ripens over a short spanBush (determinate) tomatoes
Determinate inflorescenceInflorescenceMain axis ends in a flower; flowers open from the top or center outwardCymes of chickweed
DiadelphousAntherStamens joined by filaments into two groups, typically 9 + 1Pea; bean
DichogamyReproductionMale and female parts of a flower mature at different timesProtandrous sunflower; protogynous magnolia
Dichotomous venationVenationVeins fork repeatedly in pairs, no cross-connectionsGinkgo; maidenhair fern
DictyosteleSteleSiphonostele broken into a net of strands by many overlapping leaf gapsMany fern rhizomes
DidynamousAntherFour stamens, two long and two shortDeadnettle (Lamium); snapdragon
DioeciousReproductionMale and female flowers (or cones) on separate plantsHolly; ginkgo; asparagus; date palm
DistichousLeaf arrangementLeaves in two vertical rows on opposite sides of the stemGrasses; elm; iris
DivisionHorticultureSplitting a clump into rooted pieces to propagate itHosta; daylily; iris rhizomes
DorsifixedAntherFilament attached to the back of the anther, anther fixedPassiflora
Doubly serrateLeaf marginLarge teeth themselves bearing smaller teethBirch; American elm
DrupeFruitFleshy fruit with one seed inside a stony endocarp (pit)Peach; cherry; olive
ElaiosomeSeedFat-rich appendage on a seed that attracts antsTrillium; bloodroot; violets
EllipticLeaf shapeWidest at the middle, tapering equally to both endsFlowering dogwood
EmarginateLeaf apexShallowly notched at the tipBoxwood
EndospermSeedFood-storing tissue of angiosperm seeds, usually triploidCoconut water and meat; popcorn starch
EntireLeaf marginSmooth margin without teeth or lobesMagnolia; lilac
EntomophilyPollinationInsect pollination; colorful, scented flowers with nectarApple; sunflower; clover
EphemeralLife historyVery short-lived plant, or one with a brief above-ground seasonDesert annuals; spring ephemerals like trout lily
EpicotylSeedEmbryonic stem above the cotyledonsHooked shoot of a pea seedling
Epigeal germinationSeedHypocotyl elongates and lifts the cotyledons above the soilCommon bean; sunflower
EpigynousOvary positionFloral parts attached at the top of an inferior ovaryApple; squash; sunflower
EpipetalousAntherStamens attached to the petals or corolla tubeMorning glory; mint; tomato
EpiphyteGrowth formGrows on another plant for support only, not as a parasiteSpanish moss; many orchids and bromeliads
EspalierHorticultureTraining a tree or shrub flat against a wall or frameEspaliered apple and pear
EtiolationHorticulturePale, spindly, long-internode growth in darkness or low lightSeedlings on a dim windowsill
EusteleSteleDiscrete collateral vascular bundles in a ring around a pithSunflower and other eudicot stems; conifers
EvergreenLife historyKeeps green leaves year round, shedding them graduallyPine; holly; rhododendron
Exalbuminous seedSeedMature seed with no endosperm left; food stored in cotyledonsBean; pea; peanut
F1 hybridHorticultureFirst-generation cross of two inbred parents; uniform and vigorous; seed does not breed trueMost modern sweet corn
FascicleLeaf partBundle of conifer needles held in a basal sheathFive needles in eastern white pine; two in red pine
Fibrous root systemRootMany similar-sized roots from the stem base, no dominant taprootGrasses; corn; onion
FloretFlowerSmall individual flower in a dense clusterFlorets of a sunflower head or grass spikelet
FollicleFruitDry fruit from one carpel that splits along one seamMilkweed; peony; columbine
ForbGrowth formBroad-leaved herbaceous plant that is not a grass, sedge or rushClover; aster; goldenrod
Free-central placentationPlacentationOvules on a free-standing central column in a one-chambered ovaryCarnation; primrose
FunnelformCorollaTube widening gradually into a flaring limb (infundibuliform)Morning glory; petunia
GamopetalousCorollaPetals fused into a tube (sympetalous)Morning glory; petunia
GeitonogamyPollinationPollen from another flower on the same plant; genetically selfingFlowers on one corn plant
GeophyteRaunkiær life formPerennates by underground buds on bulbs, corms, tubers or rhizomesTulip; crocus; potato
GlabrousLeaf surfaceSmooth, without hairsUpper surface of a magnolia leaf
GlandularLeaf surfaceBearing secretory hairs or glands, often stickyPetunia; tobacco; sundew tentacles
GlaucousLeaf surfaceCovered with a whitish or bluish waxy bloom that rubs offBlue spruce; cabbage; plum skin
GraftingHorticultureJoining a scion to a rootstock so the vascular cambia uniteApple cultivars on dwarfing rootstocks
GraminoidGrowth formGrass-like plant: grasses, sedges, rushesBluestem; sedges
GynoeciumFlowerAll the carpels of a flower; the female whorlPistils in the center of a buttercup
HalophyteEcologyPlant adapted to salty soil or waterPickleweed (Salicornia); mangroves
Hardening offHorticultureGradually exposing transplants to outdoor conditionsMoving seedlings outside a few hours a day
Hardiness zoneHorticultureUSDA map zone based on average annual extreme minimum temperatureZone 5 vs. zone 9
HastateLeaf shapeArrowhead-shaped with basal lobes pointing outwardSheep sorrel (Rumex acetosella)
HaustoriumRootAbsorptive organ a parasite inserts into host tissueDodder; mistletoe
HeartwoodAnatomyInner, dead, darker secondary xylem that no longer conducts waterDark center of black walnut lumber
HelophyteRaunkiær life formMarsh plant with buds in waterlogged soil and shoots above waterCattail; arrowhead
HemicryptophyteRaunkiær life formPerennating buds at the soil surface, often protected by litter or snowDandelion; many grasses
HemiparasiteGrowth formParasite that photosynthesizes but takes water and minerals from a hostMistletoe; Indian paintbrush
HerbaceousStemNon-woody; above-ground stems die back after the seasonBasil; hosta; peony
HesperidiumFruitBerry with a leathery oil-dotted rind and juice sacs in segmentsOrange; lemon
HeterophyllyLeaf partDifferent leaf shapes on the same plantSassafras; juvenile vs. adult English ivy
HeterostylyReproductionFlowers of different plants have different style and stamen lengths, promoting outcrossingPrimrose (pin and thrum); buckwheat
HilumSeedScar on a seed where the funiculus was attached"Eye" of a black-eyed pea
HirsuteLeaf surfaceCovered in coarse, rather stiff hairsStems of many sunflowers
HoloparasiteGrowth formParasite without chlorophyll, wholly dependent on its hostDodder; Rafflesia; broomrape
HydrochoryDispersalDispersal by waterCoconut; water lily seeds
HydrophyteEcologyPlant growing in water or waterlogged soilWater lily; duckweed; pondweed
HypanthiumFlowerFloral cup formed from the fused bases of sepals, petals and stamensCherry; rose; fleshy part of apple
HypocotylSeedEmbryonic stem between cotyledons and radicleHook of a bean seedling
Hypogeal germinationSeedEpicotyl elongates and cotyledons stay below groundPea; corn; oak
HypogynousOvary positionSepals, petals and stamens attached below a superior ovaryButtercup; tomato; mustard
Imperfect flowerFlowerUnisexual flower: stamens or carpels but not bothCorn tassel and ear flowers; squash
Incomplete flowerFlowerMissing one or more of the four floral whorlsGrass flowers; any unisexual flower
IndehiscentFruitNot splitting open at maturityAcorn; achene; samara
Indeterminate growthHorticultureShoot keeps elongating and flowering until killed by frostVining (indeterminate) tomatoes; pole beans
Indeterminate inflorescenceInflorescenceMain axis keeps growing; flowers open from the base or edge inwardRaceme of lupine; spike of gladiolus
Inferior ovaryOvary positionOvary below the attachment of sepals, petals and stamensApple; squash; banana; daffodil
Intercalary meristemAnatomyMeristem at the base of internodes or leavesGrass stems and leaves regrow after mowing
InvolucreInflorescenceWhorl of bracts below an inflorescenceGreen bracts under a sunflower head
KeelCorollaTwo lower fused petals enclosing stamens and pistil in a papilionaceous flowerPea; lupine
LanceolateLeaf shapeLance-shaped; long, widest below the middle, tapering to the tipWillow; peach
LaticiferAnatomyCell or tube that holds latexMilkweed; rubber tree; opium poppy
LayeringHorticultureRooting a stem while still attached to the parent plantAir layering of rubber plant; tip layering of blackberry
Leaf scarBud and twigScar on a twig where a leaf petiole was attachedLarge shield-shaped scars on ailanthus
LegumeFruitDry fruit from one carpel splitting along two seamsPea; bean; peanut (indehiscent)
LenticelStemRaised pore in bark or periderm allowing gas exchangeHorizontal marks on cherry and birch bark
LianaGrowth formWoody climbing vine rooted in the groundWild grape; poison ivy vines; wisteria
LigulateCorollaStrap-shaped corollaRay florets; dandelion florets
LiguleLeaf partMembrane or hair fringe where a grass blade meets the sheathGrass leaf collar
LinearLeaf shapeLong and narrow with nearly parallel sidesGrasses; daylily
LomentFruitLegume constricted between seeds that breaks into one-seeded piecesTick trefoil (Desmodium)
MarcescentLife historyDead leaves that stay on the plant through winterYoung oak and American beech
Marginal placentationPlacentationOvules along one suture of a single-carpel ovaryPea; bean
MesophyllAnatomyLeaf photosynthetic tissue; palisade and spongy layersLeaf cross section
MicropyleSeedSmall opening in the integuments where the pollen tube enters; later a pore in the seed coatPore next to a bean's hilum
Mixed budBud and twigBud containing both leaves and flowersApple spur buds
MonadelphousAntherStamens joined by filaments into a single tubeHibiscus; hollyhock
MonocarpicLife historyFlowers and fruits once, then dies (semelparous)Agave (century plant); bamboo; annuals
MonoeciousReproductionSeparate male and female flowers on the same plantCorn; squash; oak; birch
MucronateLeaf apexEnding in a short, abrupt pointAlfalfa leaflets
Multiple fruitFruitFruit formed from the ovaries of many flowers fused togetherPineapple; mulberry; fig
MycoheterotrophGrowth formNon-green plant that gets carbon from mycorrhizal fungiIndian pipe (Monotropa)
MycorrhizaRootMutualism between fungus and root aiding mineral (especially P) uptakeEctomycorrhizae on pine; arbuscular on corn
MyrmecochoryDispersalSeed dispersal by antsTrillium; bloodroot
Naked budBud and twigBud without protective scalesPawpaw; witch hazel
NutFruitHard, dry, indehiscent fruit, usually one seed, from a compound ovaryAcorn; hazelnut; chestnut
ObcordateLeaf shapeInverted heart shape, notch at the tipWood sorrel (Oxalis) leaflets
ObliqueLeaf baseSides of the base unequalAmerican elm; hackberry; basswood
OblongLeaf shapeLonger than wide with nearly parallel sidesBanana
ObovateLeaf shapeEgg-shaped with the broad end at the tipPawpaw; many magnolias
OcreaLeaf partSheath around the stem formed from fused stipulesKnotweed; rhubarb; buckwheat
Odd-pinnateCompound leafPinnately compound with a terminal leaflet (imparipinnate)Ash; rose; sumac
Open-pollinatedHorticulturePollinated naturally; seed grows true to type if isolatedHeirloom beans and tomatoes
OppositeLeaf arrangementTwo leaves per node on opposite sidesMaple; ash; dogwood; horse chestnut
OrbicularLeaf shapeNearly circularNasturtium
OvateLeaf shapeEgg-shaped, broadest below the middleHibiscus; lilac
OvuleSeedMegasporangium with integuments; becomes the seed after fertilizationOvules inside a pea flower's ovary
Palmate venationVenationSeveral major veins radiate from the baseMaple; sycamore
Palmately compoundCompound leafLeaflets radiate from the petiole tipHorse chestnut; buckeye; Virginia creeper
Palmately lobedLeaf shapeLobes radiating from a common pointMaple; sweetgum
PanicleInflorescenceBranched raceme; compound indeterminate clusterOat; rice; yucca
PapilionaceousCorollaButterfly-like corolla with banner, two wings and a keelPea; bean; clover
PappusFlowerModified calyx of bristles, hairs or scales on Asteraceae fruitsDandelion "parachute"
Parallel venationVenationMain veins run side by side along the bladeGrasses; corn; lily
Parietal placentationPlacentationOvules on the inner wall of a one-chambered compound ovaryViolet; papaya; mustard
ParthenocarpyReproductionFruit development without fertilization, giving seedless fruitBanana; navel orange; seedless cucumber
PedicelInflorescenceStalk of a single flower in an inflorescenceStalk of each cherry
PeduncleInflorescenceStalk of a whole inflorescence or a solitary flowerStalk of a sunflower head
PeltateLeaf shapePetiole attached to the underside of the blade, not the marginNasturtium; lotus; mayapple
PepoFruitBerry with a hard rind, from an inferior ovaryPumpkin; cucumber; watermelon
PerennialLife historyLives more than two yearsHosta; oak; asparagus
Perfect flowerFlowerHas both stamens and carpels (bisexual)Lily; rose; tomato
PerfoliateLeaf baseLeaf base surrounding the stem so the stem seems to pierce itPerfoliate bellwort; boneset (connate-perfoliate)
PerianthFlowerCalyx and corolla together, or all the tepalsSix tepals of a tulip
PericarpFruitFruit wall developed from the ovary wall: exocarp, mesocarp, endocarpPeel, flesh and pit of a peach
PerigynousOvary positionFloral parts on the rim of a hypanthium around a free, superior ovaryCherry; plum; rose
PerispermSeedFood storage tissue derived from the nucellusBeet; black pepper
PhanerophyteRaunkiær life formPerennating buds on shoots well above the groundTrees and shrubs
PhellogenAnatomyCork cambium; produces cork outward and phelloderm inwardSource of commercial cork in cork oak
PhyllaryInflorescenceSingle bract of the involucre of an Asteraceae headSpiny phyllaries of thistles and artichoke
PhyllocladeStem modificationFlattened green stem of several internodes doing photosynthesisPrickly pear (Opuntia) pads; Christmas cactus
PhyllodeLeaf modificationFlattened petiole that functions as a leaf bladeAustralian acacias
PhyllotaxyLeaf arrangementArrangement of leaves on a stem; spiral often near 137.5 degreesSunflower; pine cone spirals
PinchingHorticultureRemoving a shoot tip to break apical dominance and promote branchingBasil; chrysanthemum; fuchsia
Pinnate venationVenationLateral veins branch from one midrib like a featherElm; beech; cherry
Pinnately compoundCompound leafLeaflets arranged on both sides of a rachisAsh; walnut; rose
Pinnately lobedLeaf shapeLobes arranged along both sides of a midribWhite oak
PistilFlowerStigma, style and ovary; one carpel or several fused carpelsPistil in the center of a lily
PistillateFlowerBearing only carpels (female)Corn ear; female holly flowers
PlacentationPlacentationArrangement of placentas (ovule-bearing tissue) and their ovules within an ovaryAxile in tomato; parietal in violet
PlectosteleSteleProtostele with xylem in parallel platesLycopodium (club moss) stems
PlumuleSeedEmbryonic shoot tip above the cotyledonsTiny leaves inside a bean seed
PneumatophoreRootRoot growing upward out of mud or water to take in airBlack mangrove; bald cypress knees (function debated)
PolliniumFlowerMass of pollen grains moved as a single unitMilkweed; orchids
PolyembryonySeedMore than one embryo in one seedCitrus; mango
PolypetalousCorollaPetals separate (choripetalous)Rose; buttercup
PomeFruitAccessory fruit whose flesh is the hypanthium around a papery coreApple; pear; quince
PoricidalAntherOpening through pores, used for anthers and capsulesBlueberry and eggplant anthers (buzz pollination); poppy capsule
PrickleStem modificationSharp outgrowth of epidermis or cortex, not a leaf or stemRose; raspberry
Prop rootRootAdventitious root from the lower stem that braces the plantCorn; red mangrove
ProtandryReproductionAnthers shed pollen before the stigma of the same flower is receptiveSunflower; carrot; Campanula
ProtogynyReproductionStigma receptive before the same flower's anthers shed pollenMagnolia; plantain (Plantago)
ProtosteleSteleSolid central core of xylem surrounded by phloem, no pithRoots; Rhynia; club mosses
Pseudoterminal budBud and twigUppermost lateral bud that acts as terminal after the shoot tip abortsElm; basswood
PubescentLeaf surfaceCovered with short, soft hairsPeach fruit skin; African violet leaves
RacemeInflorescenceUnbranched indeterminate axis with stalked flowersSnapdragon; lupine; foxglove
RachisCompound leafMain axis of a pinnately compound leaf or inflorescenceMidline of an ash leaf
RadicleSeedEmbryonic root; first structure out of a germinating seedEmerging tip of a sprouting bean
Ray floretFlowerStrap-shaped floret at the edge of a composite headYellow "petals" of a sunflower
Recalcitrant seedSeedSeed killed by drying, so it cannot be stored long (opposite: orthodox seeds like wheat and bean)Avocado; cacao; oak acorns
ReceptacleFlowerTip of the flower stalk bearing the floral partsRed flesh of a strawberry
ReniformLeaf shapeKidney-shapedWild ginger (Asarum)
Reticulate venationVenationVeins forming a branching network (netted)Most eudicots; maple; oak
RevoluteLeaf marginMargin rolled under toward the lower surfaceRosemary
RhizomeStem modificationHorizontal underground stem with nodes and scale leavesIris; ginger; bamboo
Root noduleRootSwelling that houses nitrogen-fixing bacteriaRhizobium nodules on pea and clover roots (Bradyrhizobium on soybean)
RootstockHorticultureLower part of a graft providing rootsM9 dwarfing apple rootstock
RosetteLeaf arrangementCluster of leaves crowded at the stem baseDandelion; lettuce; first-year carrot
RotateCorollaWheel-shaped; short tube with flat spreading lobesTomato; potato
SagittateLeaf shapeArrowhead-shaped with basal lobes pointing backwardArrowhead (Sagittaria)
SalverformCorollaSlender tube that abruptly flares into a flat limbPhlox; periwinkle
SamaraFruitDry indehiscent fruit with a wingMaple (double samara); ash; elm
SapwoodAnatomyOuter, lighter, water-conducting secondary xylemPale outer wood of a log
ScabrousLeaf surfaceRough to the touch like sandpaperCommon sunflower leaves
ScapeInflorescenceLeafless flowering stalk rising from ground levelDandelion; onion; daylily
ScarificationHorticultureBreaking or softening a hard seed coat to allow water uptakeNicking morning glory or lupine seeds
SchizocarpFruitDry fruit from a compound ovary that splits into one-seeded mericarpsCarrot; maple; mallow
ScionHorticultureUpper part of a graft that becomes the shoot'Gala' apple scion
SclereidAnatomyShort, irregular sclerenchyma cell with a thick lignified wall (stone cell)Grit in pear flesh; nut shells
ScutellumSeedSingle cotyledon of a grass embryo that absorbs endosperm foodCorn kernel embryo
SerrateLeaf marginSharp, saw-like teeth pointing toward the tipBlack cherry; peach
SheathLeaf partLeaf base wrapping around the stemGrass and corn leaf sheaths
SilicleFruitShort silique, about as long as wideShepherd's purse; money plant (Lunaria)
SiliqueFruitLong dry fruit of two carpels whose valves split away from a persistent replum and central partition (septum)Mustard; radish; Arabidopsis
Simple fruitFruitFruit from a single ovary of a single flowerPeach; tomato; bean pod
Simple leafLeaf partBlade in one piece, even if lobedOak; maple
SiphonosteleSteleStele with a central pith surrounded by a cylinder of vascular tissueMany fern rhizomes; horsetails
SolenosteleSteleSiphonostele with phloem both inside and outside the xylem and widely spaced leaf gapsSome fern rhizomes (Marsilea)
SorosisFruitMultiple fruit from a fleshy spike or catkin of flowersPineapple; mulberry
SpadixInflorescenceFleshy spike of tiny flowers, usually with a spatheJack-in-the-pulpit; Anthurium; calla lily
SpatheLeaf modificationLarge bract enclosing or subtending a spadixWhite "flower" of calla lily
SpikeInflorescenceUnbranched indeterminate axis with sessile flowersPlantain (Plantago); gladiolus; wheat (compound)
SpikeletInflorescenceBasic grass flower unit: florets on a small axis above two empty bracts (glumes); each floret enclosed by a lemma and paleaSpikelets of wheat
SpineLeaf modificationSharp, hard modified leaf or stipuleCactus spines; barberry
SpinoseLeaf marginMargin with sharp spinesAmerican holly
Spring ephemeralEcologyWoodland herb that grows and flowers before the canopy leafs outTrillium; spring beauty; bloodroot
SpurBud and twigShort shoot with crowded nodes, often fruit-bearing; also a hollow nectar sac on a flowerApple spurs; columbine petal spurs
StamenFlowerMale organ: anther on a filamentSix stamens of a lily
StaminateFlowerBearing only stamens (male)Corn tassel; male birch catkins
SteleSteleCentral vascular cylinder of a stem or root, with pericycle and pith if presentRoot stele inside the endodermis
Stem tendrilStem modificationModified stem that coils around supportsGrape; passionflower
StipuleLeaf partSmall leaf-like appendage at the base of a petioleLarge stipules of pea; rose stipules
Stipule scarBud and twigScar left by a fallen stipule; may encircle the twigRing around tulip tree and magnolia twigs
StolonStem modificationHorizontal stem along the surface rooting at nodesStrawberry; bermudagrass
Storage rootRootRoot thickened with stored foodSweet potato; dahlia; carrot
StratificationHorticultureHolding seeds cold and moist to break dormancyApple and maple seeds
SubshrubGrowth formPlant woody only at the base, with herbaceous upper stemsLavender; thyme
SucculentGrowth formPlant with thick fleshy water-storing leaves or stemsAloe; jade plant; cacti
SuckerStem modificationShoot arising from a root or the base of the plantRed raspberry; lilac; sumac
Superior ovaryOvary positionOvary above the attachment of sepals, petals and stamensTomato; lily; pea
SyconiumFruitMultiple fruit from a hollow receptacle lined with flowersFig
SyncarpousFlowerCarpels fused into one compound pistilTomato; lily; orange
SyngenesiousAntherAnthers fused into a tube, filaments freeSunflower; daisy (Asteraceae)
TaprootRootDominant main root from the radicle, with smaller lateralsCarrot; dandelion; oak seedling
TendrilLeaf modificationSlender coiling organ for climbing; may be modified leaf, leaflet or stemPea leaflet tendrils
TepalFlowerPerianth part not distinguished as sepal or petalTulip; lily
Terminal budBud and twigBud at the tip of a twigLarge terminal bud of horse chestnut
TetradynamousAntherSix stamens, four long and two shortMustard family (Brassicaceae)
TherophyteRaunkiær life formAnnual that survives the bad season only as seedSunflower; corn; desert annuals
ThornStem modificationSharp modified stem (branch) arising from an axillary budHawthorn; honey locust; citrus
TillerStemShoot from the base of a grass plantTillers of wheat and rice
Tissue cultureHorticultureGrowing plants from cells or tissues on sterile nutrient media (micropropagation)Orchids; banana plantlets
TomentoseLeaf surfaceDensely covered in matted, woolly hairsMullein; lamb's ear
TrichomeLeaf surfaceHair or other epidermal outgrowthStinging hairs of nettle; cotton fibers
TrifoliateCompound leafCompound leaf of three leaflets (trifoliolate)Clover; poison ivy; bean
TrimerousFlowerFloral parts in threes or multiples of three; typical of monocots (eudicots: fours or fives)Lily; tulip; trillium
TruncateLeaf apexSquared off as if cut straight acrossTulip tree
TuberStem modificationSwollen tip of an underground stem storing food; eyes are nodesPotato; Jerusalem artichoke
Tuberous rootRootSwollen root storing food, without nodes or eyesSweet potato; dahlia
TubularCorollaCorolla a long narrow tubeTrumpet creeper; disk florets
TwiningHabitClimbing by spiraling the stem around a supportMorning glory; pole bean; wisteria
TylosisAnatomyOutgrowth of parenchyma into a vessel that plugs itWhite oak (why it holds wine and whiskey)
UmbelInflorescenceFlower stalks all arise from one point at the top of the peduncleOnion; milkweed; carrot (compound umbel)
UndulateLeaf marginMargin wavy up and downCurly dock (Rumex crispus)
UnifoliolateCompound leafCompound leaf reduced to one leaflet, with a joint between it and the petioleCitrus (winged petiole)
UrceolateCorollaUrn-shaped, constricted at the mouthBlueberry; heath
Vascular bundleAnatomyStrand of xylem and phloemVeins of a leaf; strings in celery
Vascular cambiumAnatomyLateral meristem making secondary xylem inward and phloem outwardLayer under a tree's bark
VelamenRootSpongy multilayer epidermis of aerial roots that absorbs waterEpiphytic orchid roots
Versatile antherAntherAnther attached at a midpoint so it swings freely on the filamentGrasses; lily
VerticillasterInflorescenceFalse whorl of paired cymes at each nodeMint; sage (Salvia)
ViviparySeedSeed germinating while still attached to the parentRed mangrove; sprouting kernels on an ear of corn
WhorledLeaf arrangementThree or more leaves at a nodeCatalpa (often 3); bedstraw (Galium)
Winter annualLife historyGerminates in fall, overwinters as a seedling, flowers and dies in springWinter wheat; henbit; chickweed
XenogamyPollinationCross-pollination between flowers on different plantsApple orchards need pollinizer cultivars
XerophyteEcologyPlant adapted to dry habitats, such as with thick cuticle or sunken stomataCacti; oleander
ZoochoryDispersalSeed dispersal by animals, inside them or stuck to themBurdock burs; cherries eaten by birds
ZygomorphicSymmetryBilaterally symmetric; only one plane divides it into mirror halvesOrchid; pea; snapdragon

Common pitfalls

  • Phloem carries sugar, not water

    Xylem carries water and minerals up from roots; phloem carries sugar from sources to sinks. They are the two most common correct answers in the archive's key (22 and 21 questions).

  • Abscisic acid closes stomata

    ABA is the drought hormone: it closes stomata and keeps seeds dormant. It is the most common correct hormone answer in the archive (17 questions). Potassium entering guard cells opens stomata, it does not close them.

  • C₄ separates steps in space; CAM separates them in time

    Both reduce photorespiration, so "reduces photorespiration" does not distinguish them.

  • The Calvin cycle uses ATP and NADPH; it does not make them

    Light reactions in the thylakoids make ATP and NADPH; the Calvin cycle in the stroma spends them to build sugar. Photosystem II acts before photosystem I.

  • Cryptogam and embryophyte are not opposites

    Bryophytes and ferns are both. Algae are cryptogams but not embryophytes; seed plants are embryophytes but not cryptogams.

  • Mobile vs. immobile nutrients

    Symptoms on old leaves point to mobile nutrients (N, P, K, Mg); symptoms on new leaves and tips point to immobile ones (Ca, Fe, S, B). Calcium is a frequent correct answer in the archive (13 questions), usually tied to blossom-end rot or cell walls.

  • Nitrogen fixation vs. nitrification

    Rhizobia fix N₂ into ammonia. Nitrifying bacteria oxidize ammonium to nitrite and then nitrate. A question about legume nodules is about fixation.

  • Thorns, spines and prickles are different organs

    Thorns are modified stems (hawthorn, citrus), spines are modified leaves (cacti, barberry), and prickles are epidermal outgrowths (roses, blackberries). Pea tendrils are leaves; grape tendrils are stems; a potato is a stem and a sweet potato is a root.

  • Short-day plants measure the night

    A flash of red light in the middle of the night breaks the dark period: it stops a short-day plant from flowering and makes a long-day plant flower. Far-red right after the red cancels it; the last flash wins.

  • Gymnosperms have seeds but no fruit

    Fruits come only from ovaries, so only angiosperms make them. Club mosses are lycophytes, not mosses, and ferns are not bryophytes.

  • Fertilizer numbers are N, P₂O₅ and K₂O

    Multiply the bag weight by each percentage: 50 lb of 15-6-12 holds 7.5 lb N. The phosphorus and potassium numbers are oxides, not elements.

  • An apple and a strawberry are not "true" fruits

    Their flesh comes from the floral cup or receptacle, so they are accessory fruits. A raspberry is an aggregate of drupelets from one flower; a pineapple is a multiple fruit from many flowers.

  • Dioecious and monoecious

    Dioecious: separate male and female plants (willow, holly, asparagus, ginkgo). Monoecious: both on one plant (corn, squash). Bisexual flowers (roses) are neither.

How tournaments test this

The archive holds 2,018 Botany questions from public tests across seven seasons (2019-20 through 2025-26). The site's practice bank holds 2,866 Botany questions, and most of them are not in the archive: about 1,150 are exported from or match archive tests, and about 1,650 come from other invitational tests that the archive does not have. Those tests were written to several different topic lists, so use them for style and for the topics that overlap with 2027, not as a map of the 2027 outline.

  • What the bank asks most. Sorting the bank questions that fit the 2027 outline by main topic gives roughly: horticulture and aquaculture 11%, photosynthesis 10%, plant groups and life cycles 9%, hormones, tropisms and germination 6%, flowers, fruits and seeds 6%, ecology and adaptations 6%, roots, stems and leaves 5.5%, transport 5%, diseases and deficiencies 5%, reproduction 4%, nutrient cycles and soil 4%, crops and plant products 4%, GMOs 3%, taxonomy and identification 3%, tissues 3%, and smaller shares for cells, paleobotany, growth, medicine, biochemistry, genetics, monocots vs. dicots, history and calculations. Horticulture is heavy because many invitationals wrote practical gardening questions (propagation, pruning, fertilizer math, soil).
  • Division split. Division B accounts for 1,104 archived questions (55%), Division C for 868 (43%), and 46 are shared.
  • Question types. Multiple choice 45.8% (925), free response 40.2% (812), true/false 7.5% (151), select-all 5.5% (111), numeric 0.8% (16), matching 0.1% (3). Free response is common, so practice writing short, exact answers.
  • Task profile. "Which of the following" leads (11.8%), then "explain or why" (4.9%), definitions (2.2%), identifying a structure in a figure (2.0%) and calculations (1.8%). With supervisors supplying specimens, slides and microscopes, figure and specimen identification is likely to grow at station-format tournaments.
  • Subtopic tags (a question can carry several): Plant Anatomy 32%, Plant Physiology 21%, Reproduction 19%, Ecology 14%, Classification 14%, Photosynthesis 13%, Genetics 8%, Plant Nutrition 7%.
  • Topics that match the 2027 additions. History, medicinal plants, GMOs and plant disease all appear in the archive already, mostly in 2020-21 and 2021-22 invitationals (Theophrastus is the official key to 11 questions; Bt proteins, quinine and Rauvolfia, and crop viruses all recur). Paleobotany, algae, nutrient deficiencies and the Division C additions are thinner in the archive, so build those from the references below.
  • Concentration. The CrabSO Invitational (MD, 2026) supplies 229 questions (about 11%) and the UT Austin MiniSO Invitational (2021) 203, so a few writers shape the archive's style.
  • Recurring concepts (archive and bank prompts containing the term): "plant cells" (65), Calvin cycle (64), CAM plants (41), vascular plants (36), double fertilization (29), cell wall (28), life cycle (27), genetically modified (24), land plants (24), genetic engineering (20), carbon fixation (19), seed germination (19), guard cells (18), nitrogen cycle (17), turgor pressure (16).
  • Most common correct answers: phloem (22), xylem (21), abscisic acid (17), C₄ plants (16), auxin (14), CAM plants (14), cytokinin (14), calcium (13), ethylene (13), photosynthesis (11), Theophrastus (11).

Strategy

  • Split the outline, then cross-check. One partner owns structure, growth, transport, photosynthesis and the plant groups; the other owns history, paleobotany, genetics, ecology, crops, GMOs and disease (plus, in Division C, horticulture, biochemistry, medicine and diversity). Swap and check each other's answers in the last 10 to 15 minutes.
  • Prepare for both formats. The supervisor picks a paper test or stations. For stations, practice on a timer, identify structures from photos and slides, and use a compound microscope until focusing at high power is quick.
  • Use the sheet for what you cannot derive. History dates and names, the paleobotany timeline, the deficiency table with mobility, the hormone table, the pathogen table, the group comparison and monocot-dicot tables, the drug-source table (Division C), and the water-potential, transpiration and NPP formulas. Leave out things you can reason through, such as the logic of the disease triangle.
  • Show work in calculations. Formula, numbers with units, answer with appropriate significant figures. Rounding rules: multiply or divide to the fewest significant figures; add or subtract to the fewest decimal places; exact counts do not limit precision.
  • Answer free response with mechanism. "Older leaves yellow first because nitrogen is mobile and is moved to new growth" earns more than "nitrogen deficiency".
  • Two Class II calculators. Bring two identical scientific calculators so both partners can compute at once.

Test yourself

These questions come from public tournament tests in the archive and fall inside the 2027 outline. Each uses an official-key answer; the notes explain the reasoning where it is not obvious. Each question links to its full test.

Test yourselfPlant body, transport, photosynthesis and the major plant groups
0 / 0 correct
  1. 1

    Which of the following is true regarding vascular cambium? Select all that apply

    Question 1 options

    From: CrabSO Satellite Invitational, 2024-25, Division B

2 questions from this set are no longer available.

Practice more Botany questions →

Test yourselfHistory, genetics and reproduction
0 / 0 correct
  1. 1

    Who is known as the father of botany?

    Question 1 options

    From: UChicago Invitational, 2021-22, Division C

Practice more Botany questions →

Test yourselfCycles, crops, GMOs, disease and medicine
0 / 0 correct
  1. 1

    What process of the nitrogen cycle do the bacteria associated with legumes take part in?

    Question 1 options

    From: UChicago Invitational, 2021-22, Division C

Practice more Botany questions →

References and further reading

  • Science Olympiad event pages, the 2027 Botany rules (Division B page B11, Division C page C13) and the General Rules: https://www.soinc.org
  • OpenStax, Biology 2e, chapters on seedless and seed plants, plant form and physiology, and photosynthesis (free online): https://openstax.org/details/books/biology-2e
  • Raven, P. H., Evert, R. F. and Eichhorn, S. E., Biology of Plants (W. H. Freeman): standard reference for anatomy, physiology, plant groups and evolution.
  • Taiz, L., Zeiger, E. et al., Plant Physiology and Development (Sinauer/Oxford): water potential, mineral nutrition, deficiency symptoms and hormones.
  • Agrios, G. N., Plant Pathology (Academic Press): the disease triangle and pathogen groups.
  • American Phytopathological Society, Education Center (introductions to plant diseases): https://www.apsnet.org/edcenter
  • Royal Botanic Gardens, Kew, State of the World's Plants and Fungi reports (plant diversity and extinction risk): https://www.kew.org/science/state-of-the-worlds-plants-and-fungi
  • Field, C. B. et al. (1998), "Primary production of the biosphere", Science 281: 237-240 (global NPP estimates).
  • USDA PLANTS Database (identification, native status and distribution): https://plants.usda.gov
  • SciOly Wiki, Botany (a cross-check, not a source): https://scioly.org/wiki/index.php/Botany
  • Practice more: the Scio.ly test archive has hundreds of public Botany tests.

Condensed facts

HormoneKey effects
Auxin (IAA)Elongation, photo/gravitropism, apical dominance, rooting (IBA), 2,4-D herbicide
GibberellinStem elongation, bolting, germination (aleurone α-amylase), fruit size
CytokininCell division, lateral buds, delays senescence; made in roots
ABACloses stomata, dormancy, stress
EthyleneRipening (climacteric, + feedback), abscission, triple response
OthersBrassinosteroids (growth), jasmonate (herbivores), salicylic acid (SAR), strigolactone (branching), florigen FT
C₃C₄CAM
First enzyme / productRuBisCO / 3-PGAPEP carboxylase / OAAPEP carboxylase / malate stored
SeparationNoneSpace (bundle sheath, Kranz)Time (night uptake)
ExamplesWheat, rice, soy, potatoCorn, sugarcane, sorghum, crabgrassCacti, agave, pineapple, jade
GroupVascularDominantSeedsHallmarks
BryophytesNoGametophyte (n)NoRhizoids, swimming sperm, protonema; liverworts, mosses, hornworts
Lycophytes, ferns, horsetailsYesSporophyteNoMicrophylls (lycophytes); fronds, sori, prothallus
GymnospermsYes (tracheids; vessels only in gnetophytes)SporophyteNakedCones, pollination drop; conifers, cycads, Ginkgo, gnetophytes
AngiospermsYes (vessels)SporophyteIn fruitFlowers, double fertilization (3n endosperm), 8-nucleate embryo sac

Official references